Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7793_RS02810 Genome accession   NZ_CP060642
Coordinates   536352..536960 (-) Length   202 a.a.
NCBI ID   WP_136021554.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1312     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 531352..541960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7793_RS02795 (H7793_02810) nadE 531390..532214 (+) 825 WP_002988923.1 ammonia-dependent NAD(+) synthetase -
  H7793_RS02800 (H7793_02815) pepC 532399..533736 (+) 1338 WP_002988925.1 aminopeptidase C -
  H7793_RS02805 (H7793_02820) pbp1a 534200..536365 (-) 2166 WP_011285057.1 penicillin-binding protein PBP1A -
  H7793_RS02810 (H7793_02825) recU 536352..536960 (-) 609 WP_136021554.1 Holliday junction resolvase RecU Machinery gene
  H7793_RS02815 (H7793_02830) - 537041..537556 (+) 516 WP_011285056.1 DUF1273 domain-containing protein -
  H7793_RS02820 (H7793_02835) gpsB 537678..538004 (+) 327 WP_002983626.1 cell division regulator GpsB -
  H7793_RS02830 (H7793_02845) - 538449..539603 (+) 1155 WP_002988932.1 class I SAM-dependent RNA methyltransferase -
  H7793_RS02835 (H7793_02850) - 539617..541086 (+) 1470 WP_002988934.1 cell division site-positioning protein MapZ family protein -
  H7793_RS02840 (H7793_02855) - 541232..541714 (-) 483 WP_002988938.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23316.90 Da        Isoelectric Point: 9.8725

>NTDB_id=415874 H7793_RS02810 WP_136021554.1 536352..536960(-) (recU) [Streptococcus pyogenes strain TSPY1312]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFPLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=415874 H7793_RS02810 WP_136021554.1 536352..536960(-) (recU) [Streptococcus pyogenes strain TSPY1312]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCCTTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495

Multiple sequence alignment