Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3T12_RS06355 Genome accession   NZ_CP047779
Coordinates   1304124..1304570 (-) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1559     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299124..1309570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T12_RS06325 (E3T12_06325) gcvPA 1300050..1301396 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3T12_RS06330 (E3T12_06330) gcvT 1301416..1302507 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T12_RS06335 (E3T12_06335) - 1302666..1303190 (-) 525 WP_001015125.1 shikimate kinase -
  E3T12_RS06340 (E3T12_06340) - 1303180..1303326 (-) 147 WP_001789879.1 hypothetical protein -
  E3T12_RS06345 (E3T12_06345) comGF 1303423..1303920 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T12_RS06350 (E3T12_06350) comGE 1303838..1304137 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3T12_RS06355 (E3T12_06355) comGD 1304124..1304570 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T12_RS06360 (E3T12_06360) comGC 1304548..1304859 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T12_RS06365 (E3T12_06365) comGB 1304873..1305943 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T12_RS06370 (E3T12_06370) comGA 1305915..1306889 (-) 975 WP_160190025.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T12_RS06375 (E3T12_06375) - 1306941..1307564 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T12_RS06380 (E3T12_06380) - 1307561..1307890 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T12_RS06385 (E3T12_06385) - 1307890..1308876 (-) 987 WP_000161314.1 ROK family glucokinase -
  E3T12_RS06390 (E3T12_06390) - 1308873..1309076 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=415835 E3T12_RS06355 WP_001791207.1 1304124..1304570(-) (comGD) [Staphylococcus aureus strain UP_1559]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=415835 E3T12_RS06355 WP_001791207.1 1304124..1304570(-) (comGD) [Staphylococcus aureus strain UP_1559]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment