Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3T13_RS05655 Genome accession   NZ_CP047778
Coordinates   1128491..1129477 (-) Length   328 a.a.
NCBI ID   WP_000959276.1    Uniprot ID   A0AAJ4YXL4
Organism   Staphylococcus aureus strain UP_1572     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123491..1134477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T13_RS05630 (E3T13_05630) - 1123751..1124098 (-) 348 WP_001242102.1 hypothetical protein -
  E3T13_RS05635 (E3T13_05635) - 1124284..1124877 (+) 594 WP_000224620.1 CYTH domain-containing protein -
  E3T13_RS05640 (E3T13_05640) - 1124981..1125346 (+) 366 WP_160187038.1 truncated hemoglobin YjbI -
  E3T13_RS05645 (E3T13_05645) yjbH 1125369..1126175 (+) 807 WP_000896691.1 protease adaptor protein YjbH -
  E3T13_RS05650 (E3T13_05650) pepF 1126635..1128443 (-) 1809 WP_000082722.1 oligoendopeptidase F -
  E3T13_RS05655 (E3T13_05655) coiA 1128491..1129477 (-) 987 WP_000959276.1 competence protein CoiA Machinery gene
  E3T13_RS05660 (E3T13_05660) mecA 1129598..1130317 (-) 720 WP_001217735.1 adaptor protein MecA -
  E3T13_RS05665 (E3T13_05665) spxA 1130688..1131083 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3T13_RS05670 (E3T13_05670) trpS 1131378..1132367 (+) 990 WP_000448933.1 tryptophan--tRNA ligase -
  E3T13_RS05675 (E3T13_05675) - 1132394..1134040 (-) 1647 WP_160187039.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38741.30 Da        Isoelectric Point: 9.6486

>NTDB_id=415800 E3T13_RS05655 WP_000959276.1 1128491..1129477(-) (coiA) [Staphylococcus aureus strain UP_1572]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=415800 E3T13_RS05655 WP_000959276.1 1128491..1129477(-) (coiA) [Staphylococcus aureus strain UP_1572]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97

Multiple sequence alignment