Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H7795_RS04600 Genome accession   NZ_CP060641
Coordinates   900981..902051 (+) Length   356 a.a.
NCBI ID   WP_115255823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895981..907051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS04580 (H7795_04575) - 896968..897666 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  H7795_RS04585 (H7795_04580) - 897764..898096 (+) 333 WP_002989745.1 putative DNA-binding protein -
  H7795_RS04590 (H7795_04585) ffh 898111..899673 (+) 1563 WP_023612629.1 signal recognition particle protein -
  H7795_RS04595 (H7795_04590) - 899808..900506 (-) 699 WP_002993300.1 XRE family transcriptional regulator -
  H7795_RS04600 (H7795_04595) xerS 900981..902051 (+) 1071 WP_115255823.1 tyrosine recombinase XerS Machinery gene
  H7795_RS04605 (H7795_04600) - 902750..903232 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  H7795_RS04610 (H7795_04605) citC 903322..904374 (+) 1053 WP_011184530.1 [citrate (pro-3S)-lyase] ligase -
  H7795_RS04615 (H7795_04610) - 904484..905878 (-) 1395 WP_023612625.1 oxaloacetate decarboxylase subunit alpha -
  H7795_RS04620 (H7795_04615) citX 905893..906471 (-) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41501.59 Da        Isoelectric Point: 9.5552

>NTDB_id=415800 H7795_RS04600 WP_115255823.1 900981..902051(+) (xerS) [Streptococcus pyogenes strain TSPY210]
MRRELLLEKIETYKTIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=415800 H7795_RS04600 WP_115255823.1 900981..902051(+) (xerS) [Streptococcus pyogenes strain TSPY210]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGACCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806

Multiple sequence alignment