Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   H7795_RS03470 Genome accession   NZ_CP060641
Coordinates   674814..675776 (+) Length   320 a.a.
NCBI ID   WP_002983995.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 669814..680776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS03445 (H7795_03435) - 669818..670408 (+) 591 WP_002989185.1 serine hydrolase -
  H7795_RS03450 (H7795_03440) - 670522..671742 (-) 1221 WP_023612791.1 DUF3114 domain-containing protein -
  H7795_RS03455 (H7795_03445) queA 671749..672777 (-) 1029 WP_002983989.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H7795_RS03460 (H7795_03450) nagB 672979..673683 (+) 705 WP_023612787.1 glucosamine-6-phosphate deaminase -
  H7795_RS03465 (H7795_03455) - 673802..674518 (+) 717 WP_002995774.1 pseudouridine synthase -
  H7795_RS03470 (H7795_03460) coiA 674814..675776 (+) 963 WP_002983995.1 competence protein CoiA Machinery gene
  H7795_RS03475 (H7795_03465) pepF 675789..677594 (+) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  H7795_RS03480 (H7795_03470) - 677969..679165 (+) 1197 WP_011054651.1 OFA family MFS transporter -
  H7795_RS03485 (H7795_03475) - 679231..679938 (+) 708 WP_020837344.1 O-methyltransferase -

Sequence


Protein


Download         Length: 320 a.a.        Molecular weight: 37801.25 Da        Isoelectric Point: 10.2848

>NTDB_id=415791 H7795_RS03470 WP_002983995.1 674814..675776(+) (coiA) [Streptococcus pyogenes strain TSPY210]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=415791 H7795_RS03470 WP_002983995.1 674814..675776(+) (coiA) [Streptococcus pyogenes strain TSPY210]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416

  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403

  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403

  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403

  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403

  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403


Multiple sequence alignment