Detailed information NTG0041576

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LILAB_RS02410
• Genome accession: NC_015711
• Coordinates: 577420..578787 (+)
• Length: 455 a.a.
• NCBI ID: WP_013935589.1
• Uniprot ID: -
• Organism: Corallococcus macrosporus
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 572420..583787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILAB_RS02385 (LILAB_02425)	-	573521..573799 (-)	279	WP_013935584.1	hypothetical protein	-
LILAB_RS02390 (LILAB_02430)	bioD	573932..574615 (-)	684	WP_013935585.1	dethiobiotin synthase	-
LILAB_RS02395 (LILAB_02435)	bioF	574602..575783 (-)	1182	WP_013935586.1	8-amino-7-oxononanoate synthase	-
LILAB_RS02400 (LILAB_02440)	bioB	575790..576824 (-)	1035	WP_013935587.1	biotin synthase BioB	-
LILAB_RS02405 (LILAB_02445)	-	576967..577236 (-)	270	WP_013935588.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
LILAB_RS02410 (LILAB_02450)	radA	577420..578787 (+)	1368	WP_013935589.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48312.79 Da
• Isoelectric Point: 7.6451

>NTDB_id=41576 LILAB_RS02410 WP_013935589.1 577420..578787(+) (radA) [Corallococcus macrosporus]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGAARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLKVEGDSIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVPDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide

• Length: 1368 bp

>NTDB_id=41576 LILAB_RS02410 WP_013935589.1 577420..578787(+) (radA) [Corallococcus macrosporus]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGGTACAAAACGGCGAAGTGGCTGGGGAAGTGCCCGGACTG
TGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAACGGCGCCCGGCCTGGGGCGCCTCGGGTGGCG
CGGCGCGGCCCATGCTGCTCAAGGAGGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGCGGCTCCATCGTGCTGCTCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACCGGCTGGCTCGCCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCCGAGCGGCTGAAGGTGGAGGGTGACTCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCGCTGAAGCCGCAAGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACTCAGGTGCGCGAGGTGGCCGGCCGGCTGATGGCCTACGCGAAGCGCACGGGCGTCCCCACGTTCCTGGTGGGCC
ACGTCACGAAGGAAGGCTCCATCGCGGGTCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGGATTCTCCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTCGTGGAGGTGCCGGACCCGTCCGCGCTGTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTCG
TCACGAGCACGCTGAACGGCACGCGCCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAGCCGGCGTGTGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGGCCGTTGGATCCGAAGACGCTGGTGCTGGGTGAAGTGGGCCTCGCCGGAGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGCGCCTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCCGGCAG
CGCGCGACGGCTGGAGGACGCGGGGCCGAAGATGAAAATTGTCGGCGTGGAGACGCTCGGCGATGCGCTGGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (351-425)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-33)

• AAA domain (AAA_25) (81-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.407	100	0.534
radA	Streptococcus mitis SK321	51.974	100	0.521
radA	Streptococcus mitis NCTC 12261	51.868	100	0.519
radA	Streptococcus pneumoniae TIGR4	51.648	100	0.516
radA	Streptococcus pneumoniae Rx1	51.648	100	0.516
radA	Streptococcus pneumoniae D39	51.648	100	0.516
radA	Streptococcus pneumoniae R6	51.648	100	0.516