Detailed information    

insolico Bioinformatically predicted

Overview


Name   recO   Type   Machinery gene
Locus tag   H7795_RS00250 Genome accession   NZ_CP060641
Coordinates   33435..34190 (+) Length   251 a.a.
NCBI ID   WP_023612982.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 28435..39190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS09260 (H7795_00240) - 29955..30236 (-) 282 WP_114866002.1 transposase -
  H7795_RS00240 (H7795_00245) pcsB 30838..32034 (+) 1197 WP_023612983.1 peptidoglycan hydrolase PcsB -
  H7795_RS00245 (H7795_00250) - 32287..33249 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  H7795_RS00250 (H7795_00255) recO 33435..34190 (+) 756 WP_023612982.1 DNA repair protein RecO Machinery gene
  H7795_RS00255 (H7795_00260) plsX 34293..35300 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  H7795_RS00260 (H7795_00265) - 35293..35535 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  H7795_RS00265 (H7795_00270) purC 35686..36390 (+) 705 WP_032466404.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence


Protein


Download         Length: 251 a.a.        Molecular weight: 29473.94 Da        Isoelectric Point: 6.6937

>NTDB_id=415744 H7795_RS00250 WP_023612982.1 33435..34190(+) (recO) [Streptococcus pyogenes strain TSPY210]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHLFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=415744 H7795_RS00250 WP_023612982.1 33435..34190(+) (recO) [Streptococcus pyogenes strain TSPY210]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGTACTGATTTA
CCACTTGATTTTTCCCATCTTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602


Multiple sequence alignment