Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GVI62_RS07780 Genome accession   NZ_CP047765
Coordinates   1631898..1632524 (+) Length   208 a.a.
NCBI ID   WP_060580015.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain Eho-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1626898..1637524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI62_RS07760 (GVI62_07760) - 1627297..1629057 (-) 1761 WP_003858160.1 Lon protease family protein -
  GVI62_RS07765 (GVI62_07765) matP 1629244..1629696 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  GVI62_RS07770 (GVI62_07770) ompA 1629762..1630814 (-) 1053 WP_197355129.1 porin OmpA -
  GVI62_RS07775 (GVI62_07775) sulA 1631171..1631680 (-) 510 WP_003858155.1 SOS-induced cell division inhibitor SulA -
  GVI62_RS07780 (GVI62_07780) sxy/tfoX 1631898..1632524 (+) 627 WP_060580015.1 TfoX/Sxy family DNA transformation protein Regulator
  GVI62_RS07785 (GVI62_07785) yccS 1632481..1634643 (-) 2163 WP_003858151.1 YccS family putative transporter -
  GVI62_RS07790 (GVI62_07790) - 1634662..1635108 (-) 447 WP_003858149.1 YccF domain-containing protein -
  GVI62_RS07795 (GVI62_07795) helD 1635231..1637285 (+) 2055 WP_060580014.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23978.59 Da        Isoelectric Point: 9.4590

>NTDB_id=415717 GVI62_RS07780 WP_060580015.1 1631898..1632524(+) (sxy/tfoX) [Enterobacter hormaechei strain Eho-1]
MKKISYERIYQSQEYLSPLGEILHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=415717 GVI62_RS07780 WP_060580015.1 1631898..1632524(+) (sxy/tfoX) [Enterobacter hormaechei strain Eho-1]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCTTCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment