Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7796_RS06115 Genome accession   NZ_CP060640
Coordinates   1251748..1252356 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain TSPY764     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246748..1257356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7796_RS06085 (H7796_06100) - 1246998..1247480 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  H7796_RS06090 (H7796_06105) - 1247625..1249094 (-) 1470 WP_020905376.1 cell division site-positioning protein MapZ family protein -
  H7796_RS06095 (H7796_06110) - 1249108..1250262 (-) 1155 WP_228631268.1 class I SAM-dependent RNA methyltransferase -
  H7796_RS06105 (H7796_06120) gpsB 1250707..1251033 (-) 327 WP_002983626.1 cell division regulator GpsB -
  H7796_RS06110 (H7796_06125) - 1251152..1251667 (-) 516 WP_002994217.1 DUF1273 domain-containing protein -
  H7796_RS06115 (H7796_06130) recU 1251748..1252356 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  H7796_RS06120 (H7796_06135) pbp1a 1252343..1254508 (+) 2166 WP_020905378.1 penicillin-binding protein PBP1A -
  H7796_RS06125 (H7796_06140) pepC 1254974..1256311 (-) 1338 WP_002983616.1 aminopeptidase C -
  H7796_RS06130 (H7796_06145) nadE 1256496..1257320 (-) 825 WP_136047903.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=415716 H7796_RS06115 WP_002983622.1 1251748..1252356(+) (recU) [Streptococcus pyogenes strain TSPY764]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=415716 H7796_RS06115 WP_002983622.1 1251748..1252356(+) (recU) [Streptococcus pyogenes strain TSPY764]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAGCGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5