Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7797_RS07245 Genome accession   NZ_CP060639
Coordinates   1446900..1447508 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain TSPY153     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441900..1452508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7797_RS07215 (H7797_07185) - 1442150..1442632 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  H7797_RS07220 (H7797_07190) - 1442777..1444246 (-) 1470 WP_014407751.1 cell division site-positioning protein MapZ family protein -
  H7797_RS07225 (H7797_07195) - 1444260..1445414 (-) 1155 WP_011888664.1 class I SAM-dependent RNA methyltransferase -
  H7797_RS07235 (H7797_07205) gpsB 1445859..1446185 (-) 327 WP_002983626.1 cell division regulator GpsB -
  H7797_RS07240 (H7797_07210) - 1446304..1446819 (-) 516 WP_111693336.1 DUF1273 domain-containing protein -
  H7797_RS07245 (H7797_07215) recU 1446900..1447508 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  H7797_RS07250 (H7797_07220) pbp1a 1447495..1449660 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  H7797_RS07255 (H7797_07225) pepC 1450127..1451464 (-) 1338 WP_002983616.1 aminopeptidase C -
  H7797_RS07260 (H7797_07230) nadE 1451649..1452473 (-) 825 WP_111693337.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=415620 H7797_RS07245 WP_002983622.1 1446900..1447508(+) (recU) [Streptococcus pyogenes strain TSPY153]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=415620 H7797_RS07245 WP_002983622.1 1446900..1447508(+) (recU) [Streptococcus pyogenes strain TSPY153]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5