Detailed information NTG0041559

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NRG857_RS13745
• Genome accession: NC_017634
• Coordinates: 2826866..2827858 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O83:H1 str. NRG 857C
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2821866..2832858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRG857_RS13725 (NRG857_13415)	ygbM	2822497..2823273 (+)	777	WP_001136912.1	HPr family phosphocarrier protein	-
NRG857_RS13730 (NRG857_13420)	ygbN	2823362..2824726 (+)	1365	WP_000104433.1	GntP family transporter	-
NRG857_RS13735 (NRG857_13425)	-	2824869..2825912 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
NRG857_RS13740 (NRG857_13430)	-	2826137..2826688 (+)	552	WP_001179442.1	flavodoxin family protein	-
NRG857_RS13745 (NRG857_13435)	rpoS	2826866..2827858 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
NRG857_RS13750 (NRG857_13440)	nlpD	2827921..2829015 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
NRG857_RS13755 (NRG857_13445)	pcm	2829200..2829826 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
NRG857_RS13760 (NRG857_13450)	surE	2829820..2830581 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
NRG857_RS13765 (NRG857_13455)	truD	2830562..2831611 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
NRG857_RS13770 (NRG857_13460)	ispF	2831608..2832087 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NRG857_RS13775 (NRG857_13465)	ispD	2832087..2832797 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=41559 NRG857_RS13745 WP_000081550.1 2826866..2827858(-) (rpoS) [Escherichia coli O83:H1 str. NRG 857C]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41559 NRG857_RS13745 WP_000081550.1 2826866..2827858(-) (rpoS) [Escherichia coli O83:H1 str. NRG 857C]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715