Detailed information NTG0415574

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GVI78_RS20770
• Genome accession: NZ_CP047707
• Coordinates: 4212841..4213641 (+)
• Length: 266 a.a.
• NCBI ID: WP_117049951.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn-13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4207841..4218641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI78_RS20735 (GVI78_20420)	gspH	4207997..4208512 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
GVI78_RS20740 (GVI78_20425)	gspI	4208509..4208874 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
GVI78_RS20745 (GVI78_20430)	gspJ	4208871..4209467 (+)	597	WP_023302298.1	type II secretion system minor pseudopilin GspJ	-
GVI78_RS20750 (GVI78_20435)	gspK	4209464..4210450 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
GVI78_RS20755 (GVI78_20440)	gspL	4210437..4211630 (+)	1194	WP_029498035.1	type II secretion system protein GspL	-
GVI78_RS20760 (GVI78_20445)	-	4211623..4212108 (+)	486	WP_004145896.1	type II secretion system protein M	-
GVI78_RS20765 (GVI78_20450)	-	4212098..4212844 (+)	747	WP_004145897.1	type II secretion system protein N	-
GVI78_RS20770 (GVI78_20455)	pilD	4212841..4213641 (+)	801	WP_117049951.1	A24 family peptidase	Machinery gene
GVI78_RS20775 (GVI78_20460)	hrpB	4213689..4216118 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
GVI78_RS20780 (GVI78_20465)	thpR	4216191..4216727 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
GVI78_RS20785 (GVI78_20470)	sfsA	4216727..4217443 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
GVI78_RS20790 (GVI78_20475)	dksA	4217606..4218061 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29399.05 Da
• Isoelectric Point: 8.8894

>NTDB_id=415574 GVI78_RS20770 WP_117049951.1 4212841..4213641(+) (pilD) [Klebsiella pneumoniae strain Kpn-13]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
PLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=415574 GVI78_RS20770 WP_117049951.1 4212841..4213641(+) (pilD) [Klebsiella pneumoniae strain Kpn-13]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
CCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425