Detailed information NTG0415550

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GVI79_RS21865
• Genome accession: NZ_CP047700
• Coordinates: 4381508..4382308 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn-14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4376508..4387308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI79_RS21830 (GVI79_21490)	gspH	4376664..4377179 (+)	516	WP_062920974.1	type II secretion system minor pseudopilin GspH	-
GVI79_RS21835 (GVI79_21495)	gspI	4377176..4377541 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
GVI79_RS21840 (GVI79_21500)	gspJ	4377538..4378134 (+)	597	WP_062920975.1	type II secretion system minor pseudopilin GspJ	-
GVI79_RS21845 (GVI79_21505)	gspK	4378131..4379117 (+)	987	WP_077265688.1	type II secretion system minor pseudopilin GspK	-
GVI79_RS21850 (GVI79_21510)	gspL	4379104..4380297 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
GVI79_RS21855 (GVI79_21515)	-	4380290..4380775 (+)	486	WP_062920976.1	type II secretion system protein M	-
GVI79_RS21860 (GVI79_21520)	-	4380765..4381511 (+)	747	WP_004145897.1	type II secretion system protein N	-
GVI79_RS21865 (GVI79_21525)	pilD	4381508..4382308 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
GVI79_RS21870 (GVI79_21530)	hrpB	4382356..4384785 (-)	2430	WP_062920977.1	ATP-dependent helicase HrpB	-
GVI79_RS21875 (GVI79_21535)	thpR	4384858..4385394 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
GVI79_RS21880 (GVI79_21540)	sfsA	4385394..4386110 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
GVI79_RS21885 (GVI79_21545)	dksA	4386273..4386728 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=415550 GVI79_RS21865 WP_004145898.1 4381508..4382308(+) (pilD) [Klebsiella pneumoniae strain Kpn-14]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=415550 GVI79_RS21865 WP_004145898.1 4381508..4382308(+) (pilD) [Klebsiella pneumoniae strain Kpn-14]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425