Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7798_RS07000 Genome accession   NZ_CP060638
Coordinates   1401165..1401764 (+) Length   199 a.a.
NCBI ID   WP_010922551.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY141     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1396165..1406764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7798_RS06970 (H7798_07000) - 1396415..1396897 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  H7798_RS06975 (H7798_07005) - 1397042..1398511 (-) 1470 WP_030126347.1 cell division site-positioning protein MapZ family protein -
  H7798_RS06980 (H7798_07010) - 1398525..1399679 (-) 1155 WP_030126346.1 class I SAM-dependent RNA methyltransferase -
  H7798_RS06990 (H7798_07020) gpsB 1400124..1400450 (-) 327 WP_002983626.1 cell division regulator GpsB -
  H7798_RS06995 (H7798_07025) - 1400569..1401084 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  H7798_RS07000 (H7798_07030) recU 1401165..1401764 (+) 600 WP_010922551.1 Holliday junction resolvase RecU Machinery gene
  H7798_RS07005 (H7798_07035) pbp1a 1401751..1403916 (+) 2166 WP_030126345.1 penicillin-binding protein PBP1A -
  H7798_RS07010 (H7798_07040) pepC 1404381..1405718 (-) 1338 WP_002983616.1 aminopeptidase C -
  H7798_RS07015 (H7798_07045) nadE 1405903..1406727 (-) 825 WP_030126344.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22999.52 Da        Isoelectric Point: 9.7922

>NTDB_id=415528 H7798_RS07000 WP_010922551.1 1401165..1401764(+) (recU) [Streptococcus pyogenes strain TSPY141]
MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS
KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=415528 H7798_RS07000 WP_010922551.1 1401165..1401764(+) (recU) [Streptococcus pyogenes strain TSPY141]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAAATAAGGTGGACTTCGCCAATAG
AGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAAC
CTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTTAGACAAGCT
TCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTAT
GCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTC
TTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAATGGCAGT
AAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAA
CATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

98.995

0.508