Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GVI46_RS22305 Genome accession   NZ_CP047699
Coordinates   4367478..4369205 (-) Length   575 a.a.
NCBI ID   WP_013059135.1    Uniprot ID   -
Organism   Priestia megaterium strain 5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4362478..4374205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI46_RS22285 - 4362811..4362963 (+) 153 WP_013059130.1 YycC family protein -
  GVI46_RS22290 - 4363276..4364607 (+) 1332 WP_013059131.1 peptide MFS transporter -
  GVI46_RS22295 spo0A 4364999..4365787 (-) 789 WP_013059133.1 sporulation transcription factor Spo0A -
  GVI46_RS22300 spoIVB 4366015..4367295 (-) 1281 WP_063672666.1 SpoIVB peptidase -
  GVI46_RS22305 recN 4367478..4369205 (-) 1728 WP_013059135.1 DNA repair protein RecN Machinery gene
  GVI46_RS22310 ahrC 4369222..4369671 (-) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  GVI46_RS22315 - 4369833..4370660 (-) 828 WP_029320242.1 TlyA family RNA methyltransferase -
  GVI46_RS22320 dxs 4370657..4372558 (-) 1902 WP_160203672.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GVI46_RS22325 - 4372880..4373776 (-) 897 WP_013059139.1 polyprenyl synthetase family protein -
  GVI46_RS22330 - 4373776..4374009 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64706.27 Da        Isoelectric Point: 4.8309

>NTDB_id=415511 GVI46_RS22305 WP_013059135.1 4367478..4369205(-) (recN) [Priestia megaterium strain 5-3]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVELNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=415511 GVI46_RS22305 WP_013059135.1 4367478..4369205(-) (recN) [Priestia megaterium strain 5-3]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCCGAGT
TTGTACGCCACGGAACAGACAGAGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
TCGCATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTCGATCAATTAACTGAAAATGAGCAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTAGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATATGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAACAGTTAAACAGTGTAGCACAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAATTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACCAATCCTGGTGAACCTTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCTATTTCTGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
TCAGGTAGCAGCGATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACATCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.757

100

0.649

Multiple sequence alignment