Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GVI46_RS16125 Genome accession   NZ_CP047699
Coordinates   3208395..3209345 (-) Length   316 a.a.
NCBI ID   WP_057244399.1    Uniprot ID   -
Organism   Priestia megaterium strain 5-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3203395..3214345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI46_RS16105 - 3204344..3205186 (-) 843 WP_016764829.1 manganese catalase family protein -
  GVI46_RS16110 - 3205723..3206679 (-) 957 WP_053487467.1 siderophore ABC transporter substrate-binding protein -
  GVI46_RS16115 - 3206703..3207461 (-) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  GVI46_RS16120 - 3207455..3208402 (-) 948 WP_013057890.1 iron chelate uptake ABC transporter family permease subunit -
  GVI46_RS16125 ceuB 3208395..3209345 (-) 951 WP_057244399.1 ABC transporter permease Machinery gene
  GVI46_RS16130 - 3209664..3210470 (-) 807 WP_013057892.1 cell wall hydrolase -
  GVI46_RS16135 - 3210833..3211087 (+) 255 WP_097812220.1 hypothetical protein -
  GVI46_RS26725 - 3211169..3211333 (-) 165 WP_013057894.1 hypothetical protein -
  GVI46_RS16140 - 3211651..3211995 (-) 345 WP_013057895.1 hypothetical protein -
  GVI46_RS16145 - 3212038..3213069 (-) 1032 WP_013057896.1 zinc-binding dehydrogenase -
  GVI46_RS16150 - 3213075..3214121 (-) 1047 WP_098238977.1 galactitol-1-phosphate 5-dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35009.31 Da        Isoelectric Point: 9.9071

>NTDB_id=415500 GVI46_RS16125 WP_057244399.1 3208395..3209345(-) (ceuB) [Priestia megaterium strain 5-3]
MKFYQLILVFAVLSILSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMKILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=415500 GVI46_RS16125 WP_057244399.1 3208395..3209345(-) (ceuB) [Priestia megaterium strain 5-3]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGATTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGGCTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAAAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGTAGTATCGTAAGTTCCTTAGCTACCTTCATTGCCTATAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTTAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACTTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTCTTAGGATTAATCATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGCAAAAGCCTGCCTCATAC
AGCGCTTCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCATATGAAATCTCTATCG
GGTTAATGGTAGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5

Multiple sequence alignment