Detailed information NTG0415458

Bioinformatically predicted

Overview

• Name: exbB
• Type: Machinery gene
• Locus tag: GVI47_RS18305
• Genome accession: NZ_CP047698
• Coordinates: 3880316..3880951 (-)
• Length: 211 a.a.
• NCBI ID: WP_043253457.1
• Uniprot ID: A0A024HKS2
• Organism: Pseudomonas knackmussii strain N1-2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3868556..3883243	3880316..3880951	within	0

Gene organization within MGE regions

Location: 3868556..3883243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI47_RS18245	-	3868556..3869086 (-)	531	WP_043253446.1	YceD family protein	-
GVI47_RS18250	-	3869198..3869776 (+)	579	WP_043253447.1	nucleoside triphosphate pyrophosphatase	-
GVI47_RS18255	sppA	3869822..3870802 (-)	981	WP_160287703.1	signal peptide peptidase SppA	-
GVI47_RS18260	-	3870792..3871487 (-)	696	WP_043253449.1	HAD-IA family hydrolase	-
GVI47_RS18265	rluC	3871480..3872436 (-)	957	WP_160287704.1	23S rRNA pseudouridine(955/2504/2580) synthase RluC	-
GVI47_RS18270	rne	3873019..3876213 (+)	3195	WP_160287705.1	ribonuclease E	-
GVI47_RS18275	murB	3876380..3877399 (-)	1020	WP_160287706.1	UDP-N-acetylmuramate dehydrogenase	-
GVI47_RS18280	-	3877396..3877860 (-)	465	WP_160287707.1	low molecular weight protein-tyrosine-phosphatase	-
GVI47_RS18285	kdsB	3877860..3878624 (-)	765	WP_160287708.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GVI47_RS18290	-	3878645..3878830 (-)	186	WP_009621404.1	Trm112 family protein	-
GVI47_RS18295	lpxK	3878875..3879873 (-)	999	WP_160287709.1	tetraacyldisaccharide 4'-kinase	-
GVI47_RS18300	-	3879873..3880319 (-)	447	WP_043253456.1	biopolymer transporter ExbD	-
GVI47_RS18305	exbB	3880316..3880951 (-)	636	WP_043253457.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GVI47_RS18310	comA	3881024..3883243 (-)	2220	WP_160287710.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 22919.08 Da
• Isoelectric Point: 7.2806

>NTDB_id=415458 GVI47_RS18305 WP_043253457.1 3880316..3880951(-) (exbB) [Pseudomonas knackmussii strain N1-2]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRRSRVAPPQLLGQVWKQIKDKKMNSQALKELKANSPLGEVLAAGLVN
SKHGREIMKECIEESAGRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGEGMANAPVLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQDAIKLVEMVQGDREVDLSEDGKA

Nucleotide

• Length: 636 bp

>NTDB_id=415458 GVI47_RS18305 WP_043253457.1 3880316..3880951(-) (exbB) [Pseudomonas knackmussii strain N1-2]
GTGTGGGAACTGGTTCAAGCGGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCGTCGCGCCGCCCCAACTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCTTGAAGGAACTCAAGGCCAATTCGCCGCTGGGCGAGGTCCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGTCCGCCGGGCGGGTGATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTTGGCCTGCTCGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGAGGGCATGGCCAATGCGCCGGTGCTCGCCGGCGGTATCTCCAAGGCCCTGGTCACCACCGCTTCC
GGCCTGATCGTGGCCATCCCCGCAGTGTTCTTCCATCGCTACCTGCTGCGCCGAGTCGACGAATTGGTGGTGGCCATGGA
GCAGGACGCCATCAAGCTGGTGGAGATGGTCCAGGGTGATCGCGAAGTCGATCTGTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

• MotA/TolQ/ExbB proton channel family (MotA_ExbB) (66-188)

3D structure

• AlphaFold DB: A0A024HKS2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
exbB	Pseudomonas stutzeri DSM 10701	79.621	100	0.796