Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   GVI48_RS07700 Genome accession   NZ_CP047697
Coordinates   1668777..1669334 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663777..1674334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS07685 pilY1 1663869..1667360 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  GVI48_RS07690 pilX 1667372..1667959 (-) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  GVI48_RS07695 pilW 1667956..1668780 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  GVI48_RS07700 pilV 1668777..1669334 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  GVI48_RS07705 - 1669325..1669831 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  GVI48_RS07710 - 1669937..1670446 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  GVI48_RS07715 thiO 1670581..1671675 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  GVI48_RS07720 pilR 1671721..1673058 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=415419 GVI48_RS07700 WP_003119423.1 1668777..1669334(-) (pilV) [Pseudomonas aeruginosa strain RD1-3]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=415419 GVI48_RS07700 WP_003119423.1 1668777..1669334(-) (pilV) [Pseudomonas aeruginosa strain RD1-3]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment