Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PUV_RS02155 Genome accession   NC_015702
Coordinates   511805..513181 (+) Length   458 a.a.
NCBI ID   WP_408633530.1    Uniprot ID   -
Organism   Parachlamydia acanthamoebae UV-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 506805..518181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV_RS02130 (PUV_04640) rfbB 507479..508537 (+) 1059 WP_013924371.1 dTDP-glucose 4,6-dehydratase -
  PUV_RS02135 (PUV_04650) rfbA 508540..509409 (+) 870 WP_013924372.1 glucose-1-phosphate thymidylyltransferase RfbA -
  PUV_RS02140 (PUV_04660) rfbC 509415..509960 (+) 546 WP_013924373.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  PUV_RS02145 (PUV_04680) - 510393..511022 (+) 630 WP_232503237.1 L,D-transpeptidase -
  PUV_RS02150 (PUV_04690) rnc 511085..511795 (+) 711 WP_006342379.1 ribonuclease III -
  PUV_RS02155 (PUV_04700) radA 511805..513181 (+) 1377 WP_408633530.1 DNA repair protein RadA Machinery gene
  PUV_RS02160 (PUV_04710) hemC 513165..513857 (+) 693 WP_013924376.1 hydroxymethylbilane synthase -
  PUV_RS02165 (PUV_04720) - 513836..514471 (+) 636 WP_013924377.1 uroporphyrinogen-III synthase -
  PUV_RS02170 (PUV_04750) - 514817..515122 (+) 306 WP_013924380.1 hypothetical protein -
  PUV_RS02175 (PUV_04760) - 515132..515914 (+) 783 WP_013924381.1 hypothetical protein -
  PUV_RS02180 (PUV_04770) - 516111..517310 (+) 1200 WP_013924382.1 PP2C family serine/threonine-protein phosphatase -
  PUV_RS02185 (PUV_04780) - 517553..518167 (+) 615 WP_006342386.1 superoxide dismutase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50600.51 Da        Isoelectric Point: 7.8372

>NTDB_id=41541 PUV_RS02155 WP_408633530.1 511805..513181(+) (radA) [Parachlamydia acanthamoebae UV-7]
MVAIKQKNVWYCSECGHKQTKWLGQCPQCSRWNTFHEEVEFLGNVRFESAPSISANKPMRIKDVSSVETPRISTHIQECD
RLIGGGIVPGSLTLVGGDPGIGKSTLLLQLSNALAMQGLIILYVCGEESVEQTSMRAKRLGIESDNLYLLNETNFSAIKV
QIDNIKPDVLIVDSIQIVYKSEISSAPGSVSQVRETTTEFMHLAKGRRIATFLIGHVTKSGEIAGPRVLEHLVDTVLYFE
GDKQQNYRMIRVVKNRFGPTDEIAVFQMNSSGLTQVPNPSHIFLEERTKNRVGSVVIPTIEGTRPILIEAQALVTETVFS
TPSRRCTGLDQNRLALLLAVLEKRMRYQLYKCDVFVSIAGGIRVTEPGLDLGVLLAVASSMRNRVIDPETVVVGEVGLGG
EIRSVPRVDSRIKEALHMGFTRCVIPKRNLKGVSEEIRQKVSLIGVEFVEEAVDALIS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=41541 PUV_RS02155 WP_408633530.1 511805..513181(+) (radA) [Parachlamydia acanthamoebae UV-7]
ATTGTGGCGATTAAGCAAAAAAATGTGTGGTATTGTAGTGAATGTGGACATAAACAGACAAAATGGTTAGGTCAATGTCC
TCAATGTTCCCGCTGGAATACTTTTCATGAAGAAGTTGAGTTTTTAGGAAACGTTCGCTTCGAATCCGCTCCCTCTATCT
CTGCAAACAAGCCGATGCGTATTAAAGATGTTTCTTCAGTAGAAACTCCTCGTATTTCCACCCATATCCAAGAATGCGAT
CGCTTAATTGGCGGAGGGATTGTTCCGGGTTCTCTGACGCTTGTCGGAGGGGATCCAGGTATTGGCAAGTCCACCTTGTT
ACTCCAGCTTTCGAATGCTTTAGCTATGCAAGGGCTTATTATCCTGTATGTGTGCGGAGAAGAGTCCGTCGAGCAAACAT
CGATGCGTGCAAAGCGCTTAGGCATTGAATCTGATAACCTCTATCTCTTGAACGAAACCAATTTCTCGGCCATTAAAGTC
CAAATCGACAACATCAAACCCGACGTTCTCATTGTCGACTCGATTCAAATTGTTTACAAAAGTGAGATCAGCTCGGCTCC
TGGTTCCGTTTCGCAAGTGCGAGAAACCACGACAGAATTTATGCACCTAGCAAAAGGGCGAAGAATTGCCACTTTCTTGA
TTGGTCACGTGACAAAGTCTGGAGAGATCGCAGGTCCACGTGTGCTTGAGCACTTAGTGGATACAGTGCTCTATTTCGAA
GGGGACAAGCAGCAGAACTACCGCATGATTCGGGTTGTGAAAAACCGTTTTGGTCCAACGGATGAGATCGCGGTATTTCA
AATGAATTCAAGTGGTTTAACGCAAGTCCCAAATCCTTCACATATATTCCTCGAGGAAAGAACCAAAAATAGAGTGGGTT
CTGTGGTTATTCCTACCATTGAGGGGACTCGTCCCATTTTAATTGAAGCCCAGGCTCTTGTCACAGAAACGGTTTTTAGT
ACCCCTTCCCGTCGTTGCACAGGCTTGGACCAAAATCGTTTGGCTCTTTTGTTGGCCGTTTTAGAGAAAAGAATGCGCTA
TCAATTATATAAGTGTGACGTCTTTGTTTCGATCGCCGGAGGCATTCGTGTGACAGAACCTGGCTTAGATCTCGGTGTTT
TGCTAGCGGTTGCATCATCCATGCGCAACCGAGTCATCGATCCAGAAACAGTTGTGGTTGGAGAAGTGGGCCTTGGAGGT
GAAATTCGAAGCGTTCCCCGCGTCGATAGCCGCATTAAAGAGGCTTTGCATATGGGTTTCACACGGTGTGTCATTCCTAA
ACGCAATTTAAAAGGTGTTTCAGAAGAAATTCGCCAAAAAGTTTCTTTAATTGGTGTTGAATTTGTTGAGGAGGCCGTAG
ATGCCCTTATCTCCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(347-429)

AAA domain (AAA_25)

(65-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

98.69

0.483
  radA Streptococcus pneumoniae Rx1

48.238

99.127

0.478
  radA Streptococcus pneumoniae D39

48.238

99.127

0.478
  radA Streptococcus pneumoniae R6

48.238

99.127

0.478
  radA Streptococcus pneumoniae TIGR4

48.238

99.127

0.478
  radA Streptococcus mitis NCTC 12261

48.238

99.127

0.478
  radA Streptococcus mitis SK321

48.238

99.127

0.478

Multiple sequence alignment