Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HUG14_RS03890 Genome accession   NZ_CP060580
Coordinates   788225..788980 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain K_LL005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783225..793980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS03860 (HUG14_03860) - 783284..783733 (+) 450 WP_047205962.1 GNAT family N-acetyltransferase -
  HUG14_RS03865 (HUG14_03865) - 783810..784052 (+) 243 WP_012896919.1 TM2 domain-containing protein -
  HUG14_RS03870 (HUG14_03870) - 784133..785755 (-) 1623 WP_033900575.1 SulP family inorganic anion transporter -
  HUG14_RS03875 (HUG14_03875) - 785965..786486 (+) 522 WP_033900573.1 GNAT family N-acetyltransferase -
  HUG14_RS03885 (HUG14_03885) - 786951..788126 (+) 1176 WP_109990572.1 pyridoxal phosphate-dependent aminotransferase -
  HUG14_RS03890 (HUG14_03890) recO 788225..788980 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  HUG14_RS03895 (HUG14_03895) - 789094..789975 (+) 882 WP_109990573.1 Rgg/GadR/MutR family transcriptional regulator -
  HUG14_RS03900 (HUG14_03900) - 790204..791478 (+) 1275 WP_262384399.1 radical SAM/SPASM domain-containing protein -
  HUG14_RS03905 (HUG14_03905) - 791482..793044 (+) 1563 WP_058212287.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=415332 HUG14_RS03890 WP_003132217.1 788225..788980(+) (recO) [Lactococcus lactis strain K_LL005]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=415332 HUG14_RS03890 WP_003132217.1 788225..788980(+) (recO) [Lactococcus lactis strain K_LL005]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment