Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HUG14_RS01520 Genome accession   NZ_CP060580
Coordinates   327167..328126 (-) Length   319 a.a.
NCBI ID   WP_187398465.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 322167..333126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS01500 (HUG14_01500) - 322476..323222 (-) 747 WP_033899870.1 tyrosine-protein phosphatase -
  HUG14_RS01505 (HUG14_01505) - 323425..325227 (-) 1803 WP_187398463.1 oligopeptide ABC transporter substrate-binding protein -
  HUG14_RS01510 (HUG14_01510) oppC 325333..326217 (-) 885 WP_058203992.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  HUG14_RS01515 (HUG14_01515) oppB 326227..327186 (-) 960 WP_187398464.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  HUG14_RS01520 (HUG14_01520) amiE 327167..328126 (-) 960 WP_187398465.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  HUG14_RS01525 (HUG14_01525) oppD 328123..329139 (-) 1017 WP_187398466.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  HUG14_RS01530 (HUG14_01530) rplT 329365..329724 (-) 360 WP_003132352.1 50S ribosomal protein L20 -
  HUG14_RS01535 (HUG14_01535) rpmI 330021..330221 (-) 201 WP_003132353.1 50S ribosomal protein L35 -
  HUG14_RS01540 (HUG14_01540) infC 330350..330844 (-) 495 WP_003132354.1 translation initiation factor IF-3 -
  HUG14_RS11555 - 331307..331435 (+) 129 WP_003132356.1 hypothetical protein -
  HUG14_RS01545 (HUG14_01545) - 331454..332002 (+) 549 WP_187398467.1 hypothetical protein -
  HUG14_RS01550 (HUG14_01550) - 332013..332717 (-) 705 WP_187398468.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35985.15 Da        Isoelectric Point: 8.9944

>NTDB_id=415303 HUG14_RS01520 WP_187398465.1 327167..328126(-) (amiE) [Lactococcus lactis strain K_LL005]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDVS
KKKIRNQLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDANTENKRIHELLDIVGLPKQALEHYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKNLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRENRLKVEQDFEDKKANFYDKDGHALPLKKISESHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=415303 HUG14_RS01520 WP_187398465.1 327167..328126(-) (amiE) [Lactococcus lactis strain K_LL005]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACAATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGCAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACAATTGATTTACAAAGGACAAGATGTCAGC
AAAAAAAAGATAAGAAACCAGCTCAAATACAATAAAGATGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGAAAAACAATTTACGATATCATTGCGGAGCCTATTCGAAATTTTGAAAAATTAGATGCTAATACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACACTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCAGCATTAGACTT
ATCTGTTCAAGCTCAAGTTTTGAATTTCATGAAGCTCATTCAAAAGAACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACCGATAATATTGCGGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATTTTTGATGAGCCACAGCACATTTATACTAAACGACTCTTATCTGCTATCCCTTCGATCGATGTTACAAGAAGAGC
AGAAAATCGGGAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGACGGACACG
CTTTGCCCTTAAAAAAAATAAGTGAGAGCCATTGGGCAGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-271)

ABC transporter (ABC_tran)

(32-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

35.952

100

0.373
  amiE Streptococcus thermophilus LMD-9

35.952

100

0.373
  amiE Streptococcus thermophilus LMG 18311

35.952

100

0.373
  oppD Streptococcus mutans UA159

39.404

94.671

0.373
  amiF Streptococcus thermophilus LMD-9

47.718

75.549

0.361
  amiF Streptococcus thermophilus LMG 18311

47.718

75.549

0.361
  amiF Streptococcus salivarius strain HSISS4

46

78.37

0.361