Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NRG857_RS02270 Genome accession   NC_017634
Coordinates   493518..494123 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O83:H1 str. NRG 857C     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 488518..499123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG857_RS24010 - 489072..489170 (+) 99 Protein_446 hypothetical protein -
  NRG857_RS02240 (NRG857_02205) rsmS 489223..489384 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  NRG857_RS02245 (NRG857_02210) priC 489398..489925 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  NRG857_RS02250 (NRG857_02215) ybaN 489995..490372 (+) 378 WP_001188905.1 DUF454 family protein -
  NRG857_RS02255 (NRG857_02220) apt 490525..491076 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NRG857_RS02260 (NRG857_02225) dnaX 491205..493136 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  NRG857_RS02265 (NRG857_02230) ybaB 493189..493518 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NRG857_RS02270 (NRG857_02235) recR 493518..494123 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NRG857_RS02275 (NRG857_02240) htpG 494233..496107 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  NRG857_RS02280 (NRG857_02245) adk 496288..496932 (+) 645 WP_001313630.1 adenylate kinase -
  NRG857_RS02285 (NRG857_02250) hemH 497064..498026 (+) 963 WP_001250098.1 ferrochelatase -
  NRG857_RS02290 (NRG857_02255) aes 498001..498969 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41528 NRG857_RS02270 WP_001195025.1 493518..494123(+) (recR) [Escherichia coli O83:H1 str. NRG 857C]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41528 NRG857_RS02270 WP_001195025.1 493518..494123(+) (recR) [Escherichia coli O83:H1 str. NRG 857C]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment