Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H4B46_RS04045 Genome accession   NZ_CP060504
Coordinates   886638..886964 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain AbCTX9     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 881638..891964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS04025 (H4B46_04020) - 881740..882369 (-) 630 WP_000219974.1 FHA domain-containing protein -
  H4B46_RS04030 (H4B46_04025) gspD 882410..884686 (-) 2277 WP_001196437.1 type II secretion system secretin GspD -
  H4B46_RS04035 (H4B46_04030) - 884728..885564 (-) 837 WP_000870031.1 type II secretion system protein N -
  H4B46_RS04040 (H4B46_04035) gspN 885564..886307 (-) 744 WP_000730343.1 type II secretion system protein N -
  H4B46_RS04045 (H4B46_04040) hns 886638..886964 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  H4B46_RS04050 (H4B46_04045) - 887159..887233 (-) 75 Protein_789 acyl-CoA thioesterase -
  H4B46_RS04055 (H4B46_04050) - 887289..888223 (+) 935 Protein_790 IS5 family transposase -
  H4B46_RS04060 (H4B46_04055) - 888191..888649 (-) 459 WP_203463024.1 acyl-CoA thioesterase -
  H4B46_RS04065 (H4B46_04060) - 888657..889850 (-) 1194 WP_000681774.1 hypothetical protein -
  H4B46_RS04070 (H4B46_04065) - 889860..890699 (-) 840 WP_001230201.1 hypothetical protein -
  H4B46_RS04075 (H4B46_04070) - 890708..891475 (-) 768 WP_000897415.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=415231 H4B46_RS04045 WP_000801427.1 886638..886964(-) (hns) [Acinetobacter baumannii strain AbCTX9]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=415231 H4B46_RS04045 WP_000801427.1 886638..886964(-) (hns) [Acinetobacter baumannii strain AbCTX9]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1