Detailed information NTG0415191

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DNR44_RS13360
• Genome accession: NZ_CP047673
• Coordinates: 2664763..2667261 (-)
• Length: 832 a.a.
• NCBI ID: WP_112223772.1
• Uniprot ID: A0A365KTU3
• Organism: Planococcus halotolerans strain Y50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2659763..2672261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DNR44_RS13340 (DNR44_013285)	-	2660672..2660980 (-)	309	WP_084246213.1	DUF1292 domain-containing protein	-
DNR44_RS13345 (DNR44_013290)	ruvX	2660994..2661410 (-)	417	WP_112223774.1	Holliday junction resolvase RuvX	-
DNR44_RS13350 (DNR44_013295)	-	2661414..2661680 (-)	267	WP_071151980.1	IreB family regulatory phosphoprotein	-
DNR44_RS13355 (DNR44_013300)	alaS	2661769..2664393 (-)	2625	WP_112223773.1	alanine--tRNA ligase	-
DNR44_RS13360 (DNR44_013305)	recD2	2664763..2667261 (-)	2499	WP_112223772.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DNR44_RS13365 (DNR44_013310)	-	2667286..2667945 (-)	660	WP_205854534.1	tetratricopeptide repeat protein	-
DNR44_RS13370 (DNR44_013315)	mnmA	2667960..2669078 (-)	1119	WP_112223770.1	tRNA 2-thiouridine(34) synthase MnmA	-
DNR44_RS13375 (DNR44_013320)	-	2669092..2670225 (-)	1134	WP_112223769.1	cysteine desulfurase family protein	-
DNR44_RS13380 (DNR44_013325)	cymR	2670239..2670655 (-)	417	WP_112223768.1	cysteine metabolism transcriptional regulator CymR	-
DNR44_RS13385 (DNR44_013330)	-	2670788..2672077 (+)	1290	WP_112223767.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 832 a.a.
• Molecular weight: 92339.37 Da
• Isoelectric Point: 4.9837

>NTDB_id=415191 DNR44_RS13360 WP_112223772.1 2664763..2667261(-) (recD2) [Planococcus halotolerans strain Y50]
MTGQIDLFQEETQFVLGRPVVSIFHNPQNLFSIAKVKIQQTNTSYAEKEIIVSGYFPELSMEEEYRFTGAVKNHPRYGIQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGRDAIKKILEDPEALDAVPRLSDEKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIFQAYREETIDILTKNPFRLIEEIEGIGFQRADELGAKLGLTGSHPDRIKASILHILNQAS
LSEGHVYMDAKTLIPQVKEMLEARQQEEITIEAISKAAIELNEESKVAGEETRLYLPSLYYSEVGIATKLETLLASQENR
DGFPSSEVRKALGEAEERLGVNYAETQVQAIESSLNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPDDAQIIFV
GDQDQLPPVGPGQVLRDLLESERIPTVELTDIYRQTSGSSIIELAHQMKNGQLPADITAKTADRSFIKAGAEQIPEVVEK
VVKSALAKGHHIKDIQVLAPMYKGPAGIDALNKMIQQMVNPNTDGKRKELVFGDITYRVKDKVLQLVNQPESNVFNGDMG
EVVAIMKASETVEKQDVLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPGVFRYGVERTDDTKRMTTLKDRLSLSEPKAAEDNKTGNSAEQPKAAASSPAAPQKTVEQQKLEEEPVTAD
TSGPASLTNDNVHAIHPLIGMKGVTPRDFIES

Nucleotide

• Length: 2499 bp

>NTDB_id=415191 DNR44_RS13360 WP_112223772.1 2664763..2667261(-) (recD2) [Planococcus halotolerans strain Y50]
ATGACAGGACAAATTGATTTATTTCAGGAAGAAACGCAATTTGTGCTTGGTCGGCCGGTCGTTTCAATTTTTCATAACCC
CCAGAATCTTTTCTCCATCGCGAAAGTGAAAATCCAACAGACCAACACCTCCTACGCAGAAAAAGAAATTATTGTGTCCG
GCTATTTTCCCGAACTCTCAATGGAAGAGGAATACCGTTTTACCGGAGCGGTAAAAAATCATCCGCGCTATGGCATCCAG
TTCCAGGTGGAAACTTTCACAAAAGAAGTGCCGGAGACGGAGCAGGGCATCATCCATTACCTGTCGAGCGATATGTTCAA
CGGCATCGGCAGGAAGACGGCGGAAACCATCGTCAAGAAATTAGGCAGGGACGCCATCAAGAAAATTCTCGAAGACCCGG
AAGCGCTGGATGCAGTGCCGCGCTTGTCGGATGAAAAGAAAGACACGATCCGCTCTACACTGCAGATGAATCTTGGGCTT
GAACGGGTAATGATTCAGCTCAATGACTGGGGATTCGGTCCGCAGGTAGGAATGCGCATTTTCCAGGCCTACCGGGAAGA
GACGATTGACATCCTGACGAAAAACCCTTTCCGCCTGATCGAAGAGATTGAAGGCATCGGGTTTCAGCGTGCCGATGAAC
TTGGCGCGAAACTGGGTTTGACAGGCAGTCATCCCGACCGCATCAAAGCATCGATCCTTCATATATTGAACCAGGCTTCT
CTTTCTGAAGGGCACGTTTATATGGATGCGAAGACATTGATTCCACAGGTCAAGGAAATGCTAGAAGCAAGACAGCAGGA
AGAAATTACAATCGAAGCCATTTCGAAGGCCGCCATTGAATTGAATGAAGAAAGCAAAGTCGCGGGGGAAGAAACACGCC
TTTATTTGCCGTCGCTATATTATTCGGAAGTAGGCATTGCAACAAAACTGGAAACGTTGCTAGCATCTCAGGAAAACCGC
GATGGCTTCCCATCATCAGAAGTCCGGAAAGCGCTAGGCGAAGCTGAAGAACGTCTTGGAGTCAATTATGCGGAAACGCA
AGTCCAGGCAATCGAATCGAGCCTTAATTCATCGGTCATGATTTTGACAGGTGGGCCAGGAACCGGTAAGACGACAGTGG
TCCGGGGGCTAGTTGAAGTGTATGCGGAACTTCACGGTTTGTCGCTCGACCCGAAAGATTACGCCAAGAAAAAAGAGCCG
TTTCCTATTATTCTTGCTGCACCGACGGGACGCGCAGCAAAACGCCTGAGCGAATCGACGGAACTTCCGGCGATGACGAT
TCACCGGTTACTGGGCTTTAACGGACAGGAAAAAGAAGAAGAAACGGAAAAAGAAATCGAAGGGAAATTGATCATCATCG
ATGAAATGTCGATGGTCGATACATGGCTCGCGCACCAATTGCTGAAAGCGGTGCCGGATGACGCCCAGATTATTTTCGTC
GGCGACCAGGATCAGCTGCCGCCGGTCGGACCCGGCCAGGTGCTGCGTGATCTTCTTGAGTCCGAACGGATTCCGACGGT
TGAATTGACGGATATCTACCGCCAGACTTCAGGATCTTCTATTATAGAACTTGCTCATCAAATGAAAAACGGCCAATTGC
CGGCGGATATTACTGCCAAGACAGCAGACCGTTCGTTCATCAAAGCGGGCGCCGAACAAATACCGGAAGTGGTTGAGAAA
GTAGTTAAGAGCGCACTTGCCAAAGGACATCATATTAAAGATATCCAGGTTCTTGCGCCGATGTACAAGGGGCCAGCCGG
AATTGACGCGTTGAACAAAATGATTCAGCAGATGGTCAATCCCAATACAGACGGTAAACGAAAAGAACTTGTATTTGGTG
ACATCACCTACCGCGTTAAGGATAAAGTGCTGCAGCTGGTCAATCAGCCGGAAAGCAATGTTTTCAATGGCGATATGGGC
GAAGTGGTCGCCATCATGAAAGCGAGTGAAACGGTCGAGAAGCAGGACGTTCTGGTCGTATCGTTCGACGGCATCGAAGT
GACGTATCAGCGCAGCGACCTCAATCAGCTGACATTGGCTTATTGCTGTTCCATCCATAAATCGCAGGGCTCTGAATTTC
CGACTGTCATCATGCCGGTTGTCCGCGGCTATATGAAAATGCTGCGCCGCAATCTGCTCTATACCGGAATCACCCGCAGC
AAGGATTTTCTGATCCTTTGCGGCGATCCCGGCGTATTCCGCTATGGTGTCGAACGCACGGACGACACAAAGCGGATGAC
GACATTAAAAGATCGGCTGTCGCTGTCAGAACCTAAAGCAGCGGAGGACAATAAAACCGGAAATTCCGCTGAGCAGCCAA
AAGCCGCTGCATCCAGTCCGGCTGCACCTCAGAAAACGGTTGAACAGCAGAAGCTGGAAGAAGAGCCAGTGACTGCAGAT
ACAAGTGGACCAGCTTCTCTGACGAATGACAATGTGCATGCCATCCATCCGCTGATCGGCATGAAAGGCGTTACGCCCCG
TGATTTCATAGAGTCCTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

• AAA domain (AAA_30) (343-550)

3D structure

• AlphaFold DB: A0A365KTU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	54.182	99.159	0.537