Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DNR44_RS12815 Genome accession   NZ_CP047673
Coordinates   2561204..2562901 (-) Length   565 a.a.
NCBI ID   WP_112223868.1    Uniprot ID   A0A365KUN2
Organism   Planococcus halotolerans strain Y50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2556204..2567901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS12795 (DNR44_012740) - 2557078..2559123 (-) 2046 WP_112223872.1 sigma-54 interaction domain-containing protein -
  DNR44_RS12800 (DNR44_012745) - 2559247..2559480 (+) 234 WP_112223871.1 DUF2627 domain-containing protein -
  DNR44_RS12805 (DNR44_012750) - 2559527..2560246 (-) 720 WP_135815751.1 glycerophosphodiester phosphodiesterase -
  DNR44_RS12810 (DNR44_012755) spo0A 2560410..2561168 (-) 759 WP_112223869.1 sporulation transcription factor Spo0A -
  DNR44_RS12815 (DNR44_012760) recN 2561204..2562901 (-) 1698 WP_112223868.1 DNA repair protein RecN Machinery gene
  DNR44_RS12820 (DNR44_012765) ahrC 2562919..2563368 (-) 450 WP_112223867.1 transcriptional regulator AhrC/ArgR -
  DNR44_RS12825 (DNR44_012770) - 2563471..2564292 (-) 822 WP_112223866.1 TlyA family RNA methyltransferase -
  DNR44_RS12830 (DNR44_012775) dxs 2564289..2566193 (-) 1905 WP_112223865.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DNR44_RS12835 (DNR44_012780) - 2566286..2567164 (-) 879 WP_112223864.1 polyprenyl synthetase family protein -
  DNR44_RS12840 (DNR44_012785) - 2567161..2567397 (-) 237 WP_112223863.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63567.55 Da        Isoelectric Point: 5.4590

>NTDB_id=415189 DNR44_RS12815 WP_112223868.1 2561204..2562901(-) (recN) [Planococcus halotolerans strain Y50]
MLRELDIRNFAIIDNLTVSFTDGLTVLTGETGAGKSIIIDAVNLLAGGRGSQEFIRHGANKAEIEGLFSIENPKHPVFRK
MDELGIDSAEGDVLLRRELNDKGKNVCRINGKMVTISILREVGGALIDIHGQHETQELMDEKRHLHLLDQYAGKSLLKAK
ASYSNTYEKYMKLKREFSSYNENEQQIAQRIDLLTFQLREIEAAELVAGEEEELAMERKKLQNFNKIYESVAAAHEAIQG
ETKGLDWVGSAMSELEHAASVDETYQSHSEMVSGAFYQLQDTATEIKRMLDQMEFDPARLNEIEQRLAAIQGLKRKYGAS
VEDILLYQETQTDELDKLLNRDQRLQLDQQKLKELNEDLKVEAEELTLLRKKAATRLSKDIMEQLRELHMGKAAFEVVFE
PFAPGKFDRNGGDSIAFHISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKRIEKKRTITAVHELDGRERTEEMSRMLSGAEITELTLQHADELLKLAKDR
KLAMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=415189 DNR44_RS12815 WP_112223868.1 2561204..2562901(-) (recN) [Planococcus halotolerans strain Y50]
ATGCTTCGTGAATTGGATATACGAAATTTTGCTATTATAGATAATTTAACAGTCAGTTTTACCGATGGACTTACCGTATT
AACCGGCGAAACGGGTGCAGGAAAGTCAATAATCATCGATGCTGTCAACCTTTTGGCAGGCGGCAGGGGCAGCCAGGAAT
TTATCCGGCATGGAGCGAATAAAGCCGAGATTGAAGGGCTTTTTTCCATTGAGAATCCTAAACATCCCGTTTTTCGCAAA
ATGGATGAGCTGGGAATCGATTCTGCTGAAGGTGATGTATTGTTGCGCCGCGAGCTGAATGATAAAGGGAAAAACGTATG
CAGGATAAACGGTAAAATGGTGACGATTTCCATTTTAAGGGAAGTCGGCGGTGCCTTGATCGATATTCACGGCCAGCATG
AAACACAGGAATTGATGGATGAAAAACGGCATCTGCATCTTTTGGACCAATACGCAGGAAAAAGCCTTTTAAAAGCGAAA
GCCAGTTACTCAAATACTTATGAAAAGTACATGAAGCTTAAACGCGAATTTTCTTCGTATAATGAAAATGAGCAGCAGAT
TGCACAGCGTATTGATTTATTGACCTTTCAGTTAAGGGAAATCGAAGCAGCTGAACTTGTTGCCGGGGAAGAAGAAGAAC
TGGCAATGGAACGAAAAAAACTGCAGAACTTCAATAAAATCTATGAATCAGTGGCTGCAGCACATGAGGCGATTCAAGGT
GAAACCAAAGGTCTGGATTGGGTAGGATCTGCAATGTCAGAACTCGAACATGCCGCCTCTGTAGACGAAACATACCAAAG
CCATTCGGAAATGGTCAGTGGGGCTTTTTATCAATTGCAGGATACAGCGACAGAGATCAAACGGATGCTCGACCAAATGG
AGTTCGATCCTGCACGGCTTAACGAAATCGAGCAGCGTCTCGCCGCTATTCAAGGACTGAAGAGGAAATACGGCGCCTCC
GTGGAAGATATCCTGTTGTATCAGGAGACCCAGACCGACGAATTGGATAAATTATTAAACCGTGACCAGCGTCTTCAACT
TGACCAGCAAAAACTGAAAGAATTGAATGAGGATTTAAAAGTCGAGGCAGAAGAGCTGACTTTACTTAGAAAGAAAGCAG
CTACTCGGTTAAGTAAGGACATTATGGAGCAGCTTCGCGAATTGCATATGGGCAAGGCTGCATTTGAAGTGGTTTTCGAA
CCGTTTGCACCGGGCAAATTTGACCGAAACGGCGGGGATTCAATTGCGTTCCATATTTCAACAAATTTGGGCGAACCCTT
AAAGCCTTTGACGAAAGTCGCTTCAGGCGGTGAATTATCCCGAATGATGCTTGCTCTAAAAACGATTTTTTCGAAGCACC
AAGGAATCACTTCCATCATTTTCGATGAAGTCGACACGGGGGTCAGCGGCCGCGTAGCACAGGCGATAGCAGAAAAAATT
GCGGCTATATCCGTGCATTCCCAGGTATTGTGCATTTCTCACTTGCCGCAGGTTGCTGCAATGGCCGACCAGCATCTATT
CATTGAAAAACGAATCGAGAAGAAACGCACTATAACAGCGGTCCATGAATTGGACGGCCGTGAGCGGACGGAAGAGATGA
GCAGGATGCTCTCTGGAGCAGAAATTACAGAATTGACTTTGCAGCACGCAGATGAACTGCTTAAGCTTGCTAAAGACCGG
AAGCTTGCGATGAGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365KUN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.916

100

0.527

Multiple sequence alignment