Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DNR44_RS09215 Genome accession   NZ_CP047673
Coordinates   1844809..1846617 (+) Length   602 a.a.
NCBI ID   WP_135815422.1    Uniprot ID   -
Organism   Planococcus halotolerans strain Y50     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839809..1851617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS09195 (DNR44_009145) - 1840613..1841821 (+) 1209 WP_112223056.1 putative glycoside hydrolase -
  DNR44_RS09200 (DNR44_009150) spxA 1842189..1842584 (+) 396 WP_008429739.1 transcriptional regulator SpxA -
  DNR44_RS09205 (DNR44_009155) mecA 1842842..1843504 (+) 663 WP_135815420.1 adaptor protein MecA -
  DNR44_RS09210 (DNR44_009160) - 1843660..1844763 (+) 1104 WP_233538974.1 competence protein CoiA -
  DNR44_RS09215 (DNR44_009165) pepF 1844809..1846617 (+) 1809 WP_135815422.1 oligoendopeptidase F Regulator
  DNR44_RS09220 (DNR44_009170) - 1846922..1847719 (-) 798 WP_135815423.1 ClpXP adapter SpxH family protein -
  DNR44_RS09225 (DNR44_009175) - 1847716..1848114 (-) 399 WP_112223051.1 globin -
  DNR44_RS09230 (DNR44_009180) - 1848244..1848822 (-) 579 WP_135815424.1 CYTH domain-containing protein -
  DNR44_RS09235 (DNR44_009185) - 1849218..1849895 (+) 678 WP_112223049.1 GTP pyrophosphokinase -
  DNR44_RS09240 (DNR44_009190) - 1849892..1850698 (+) 807 WP_112223048.1 NAD kinase -
  DNR44_RS09245 (DNR44_009195) - 1850695..1851573 (+) 879 WP_112223047.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68884.50 Da        Isoelectric Point: 4.7369

>NTDB_id=415182 DNR44_RS09215 WP_135815422.1 1844809..1846617(+) (pepF) [Planococcus halotolerans strain Y50]
MANKILKREEVPVELTWKLEDIFPTDEAWESEFKEVAALAEKAGSYEGKLKEGAESLFEVLTYKDELSERLRRLYTYSHM
RYDQDTTNSKYQAMDSRIKALYAKIAAGLSFLTPEILELDEETLNGYVEEHKGLKLYKHALEELNAMRPHVLPAEQESLL
AQLSEVGSASSETFGMLNNADLEFPEIKDEDGETVQITHGNYIRFLESKDRRVREDAFKAVYATYGKFLNTFASTLAGTV
KRDNVNARVRKYDSARHAALADDHIPESVYDNLVETVNNNLHLLHRYAALRKEVLGIDKVHMWDMHTPLVKEVKMEIPYE
KATDIMLKGLSALGEEYTGIVAEGIQNRWVDVLENKGKRSGAYSSGAYGTNPYILMNWQDNVDNLFTLAHEFGHSVHSHY
TRASQPYVYGDYSIFVAEVASTTNEALLNEYMVKATEDDQERIYLLNHWLDGFRGTVFRQTMFAEFEHTIHKMDQEGEAL
TADRLTEVYYELNKKYFGEDVAVDEEIGMEWARIPHFYYNYYVFQYATGFSAATALSKGILEEGQPAVDRFINEFLKAGS
SDYPIEVLKKAGVDMTSSSPVEEACKVFEEKLIELEKLLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=415182 DNR44_RS09215 WP_135815422.1 1844809..1846617(+) (pepF) [Planococcus halotolerans strain Y50]
ATGGCTAATAAAATATTGAAACGTGAAGAAGTACCAGTTGAATTAACCTGGAAGCTGGAAGACATATTTCCGACAGACGA
AGCATGGGAAAGTGAGTTTAAAGAAGTTGCTGCACTCGCTGAAAAAGCAGGTTCATACGAAGGGAAATTGAAAGAGGGAG
CAGAATCCCTGTTTGAAGTTTTGACTTATAAGGACGAATTGTCGGAACGTTTGAGAAGATTATATACATATTCTCATATG
CGCTACGATCAGGATACGACCAATTCGAAATATCAGGCAATGGATAGCCGAATTAAGGCATTGTACGCAAAGATTGCGGC
AGGCTTGTCATTCTTGACCCCGGAAATCCTTGAGCTCGATGAAGAAACTTTAAATGGATATGTGGAAGAACATAAAGGGC
TCAAACTTTATAAGCATGCCCTGGAAGAATTGAACGCCATGCGTCCGCATGTTTTGCCGGCTGAGCAGGAATCACTGCTT
GCTCAATTATCTGAAGTTGGCAGCGCATCTTCCGAAACATTTGGCATGCTGAATAACGCAGATTTGGAATTTCCAGAGAT
TAAAGATGAAGACGGGGAAACGGTCCAGATTACACATGGCAACTATATCCGCTTCCTGGAAAGCAAAGACCGCCGTGTCC
GTGAAGATGCCTTTAAAGCGGTTTACGCCACGTATGGCAAGTTTCTTAATACTTTTGCGTCAACATTAGCCGGCACTGTG
AAACGTGATAACGTGAACGCACGAGTGCGCAAATATGATTCAGCACGGCATGCAGCTTTAGCGGATGACCACATACCGGA
AAGTGTCTATGATAATCTTGTGGAAACTGTAAATAATAATTTGCATTTATTGCATCGCTACGCGGCTCTGCGCAAAGAAG
TACTTGGCATCGATAAAGTCCATATGTGGGATATGCACACGCCGCTTGTTAAAGAAGTGAAGATGGAAATCCCTTATGAA
AAAGCGACAGACATCATGCTGAAAGGTTTGTCTGCACTTGGGGAGGAATATACAGGAATTGTCGCTGAAGGCATACAGAA
CAGATGGGTAGACGTTCTGGAGAACAAAGGGAAGCGGAGCGGAGCTTATTCATCAGGCGCTTATGGAACAAATCCCTATA
TCCTGATGAACTGGCAGGATAATGTCGATAACCTTTTCACTTTGGCCCATGAATTCGGCCACAGCGTACACAGTCACTAT
ACGCGCGCGTCACAGCCTTACGTCTATGGTGATTATTCTATTTTCGTCGCTGAAGTTGCTTCTACTACAAATGAGGCTTT
GCTGAACGAATATATGGTGAAAGCAACGGAAGATGATCAGGAGCGTATTTACTTGCTTAACCACTGGCTTGATGGTTTCC
GCGGTACCGTATTCCGCCAGACAATGTTTGCGGAATTTGAGCATACTATCCACAAAATGGATCAGGAAGGCGAAGCTTTG
ACAGCTGACCGCCTGACGGAAGTTTATTATGAATTGAATAAAAAATATTTTGGCGAAGATGTGGCAGTGGATGAAGAGAT
TGGTATGGAGTGGGCGAGAATTCCACACTTCTACTATAATTACTATGTCTTCCAATATGCTACTGGCTTTAGTGCCGCCA
CAGCATTAAGCAAAGGCATTCTGGAAGAAGGGCAGCCGGCTGTCGATCGTTTCATCAATGAATTCCTGAAAGCTGGAAGC
TCGGATTACCCGATTGAAGTCCTCAAAAAAGCAGGTGTCGATATGACTTCTTCATCTCCAGTAGAAGAGGCGTGCAAAGT
ATTTGAGGAAAAACTAATTGAACTGGAGAAGTTATTGCTGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

98.671

0.483

Multiple sequence alignment