Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DNR44_RS03200 Genome accession   NZ_CP047673
Coordinates   600643..602019 (-) Length   458 a.a.
NCBI ID   WP_112224732.1    Uniprot ID   A0A365KK67
Organism   Planococcus halotolerans strain Y50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595643..607019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS03175 (DNR44_003160) cysE 595762..596424 (-) 663 WP_112224736.1 serine O-acetyltransferase -
  DNR44_RS03180 (DNR44_003165) gltX 596734..598197 (-) 1464 WP_112224735.1 glutamate--tRNA ligase -
  DNR44_RS03185 (DNR44_003170) ispF 598256..598738 (-) 483 WP_084242209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DNR44_RS03190 (DNR44_003175) ispD 598735..599430 (-) 696 WP_112224734.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DNR44_RS03195 (DNR44_003180) - 599452..600549 (-) 1098 WP_112224733.1 PIN/TRAM domain-containing protein -
  DNR44_RS03200 (DNR44_003185) radA 600643..602019 (-) 1377 WP_112224732.1 DNA repair protein RadA Machinery gene
  DNR44_RS03205 (DNR44_003190) - 602087..604525 (-) 2439 WP_112224731.1 ATP-dependent Clp protease ATP-binding subunit -
  DNR44_RS03210 (DNR44_003195) - 604522..605622 (-) 1101 WP_112224730.1 protein arginine kinase -
  DNR44_RS03215 (DNR44_003200) - 605612..606145 (-) 534 WP_112224729.1 UvrB/UvrC motif-containing protein -
  DNR44_RS03220 (DNR44_003205) - 606160..606627 (-) 468 WP_112224728.1 CtsR family transcriptional regulator -
  DNR44_RS03225 (DNR44_003210) - 606772..607017 (-) 246 WP_112224727.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50010.49 Da        Isoelectric Point: 6.9045

>NTDB_id=415164 DNR44_RS03200 WP_112224732.1 600643..602019(-) (radA) [Planococcus halotolerans strain Y50]
MAKKKTKFVCQSCGYESAKWMGKCPNCGVWNQMTEEVEMAVPKGTRSTFQHTASAPQKATPINSIETKEEPRVTTELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSKVLYISGEESIRQTKLRAERLDASSSNLYIYAETNLELIN
HTIEEVNPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGLDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDVAPNGFDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIVPKSNIGGWDFPEGIRVVGVETVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=415164 DNR44_RS03200 WP_112224732.1 600643..602019(-) (radA) [Planococcus halotolerans strain Y50]
ATGGCTAAGAAGAAAACAAAATTCGTATGCCAATCGTGTGGATATGAATCGGCAAAGTGGATGGGGAAATGCCCGAATTG
CGGTGTATGGAACCAAATGACCGAGGAAGTTGAAATGGCTGTTCCTAAAGGGACGAGAAGTACTTTTCAGCATACAGCTT
CAGCACCTCAGAAAGCGACGCCCATCAATTCGATTGAAACAAAAGAAGAACCTCGCGTTACGACTGAGCTCAGTGAGCTG
AACCGTGTACTCGGTGGGGGAATTGTACCCGGCTCACTCGTACTGATCGGTGGAGACCCAGGTATCGGGAAATCGACGTT
ATTGCTGCAAGTGTCGGCGATGCTGGCTAATAGCGGCAGTAAAGTTCTCTACATTTCCGGTGAGGAATCCATCCGTCAGA
CTAAACTGCGGGCAGAGCGTCTCGACGCATCTTCTTCCAATCTGTATATTTACGCTGAAACTAACCTCGAGTTGATCAAC
CATACAATCGAAGAAGTAAATCCGGATTTTGTTATCGTCGATTCGATTCAGACGGTTCATCATCCTGAAGTTACGTCGGC
TCCCGGCAGTGTTACGCAAGTCCGTGAAAGTACAGCGGAATTGATGCGCATTGCCAAAACGAAGAATATTGCCATTTTCC
TTGTGGGACATGTAACGAAGGAAGGGCAGATAGCCGGACCGAGAATTCTTGAACACATGGTGGACACGGTTCTTTACTTT
GAAGGGGAGCGCCATCATACGTACCGGATTTTGCGCAGTGTCAAAAACCGCTTTGGTTCAACGAATGAAATAGCGATTTT
TGAAATGCTGCAAAGCGGGTTAAAAGAAGTTTTGAATCCGTCCGAATTATTTCTCCAAGAACGATCAAGCGGAGCGGCCG
GTTCGACAGTAGTGGCTTCAATGGAAGGGACACGGCCGATTCTGGTTGAAATTCAGGCACTTGTTACACCATCGAGTTTT
AATTATCCGAAACGGATGGCGACAGGTCTGGATCAGAATAGGGTTTCGCTATTGATGGCGGTATTGGAAAAGCGTATGGG
TATGCTGCTTCAGGCACAGGACGCTTATATCAAAGTGGCGGGCGGCGTTAAATTGGATGAGCCGGCCATCGATTTGGCTG
TGCTGGCAAGTATAGTATCCAGTTACCGTGACGTTGCACCGAACGGTTTTGATTGTATTATTGGTGAAGTCGGATTGACG
GGCGAAGTGCGGCGCGTTTCCCGGATTGAACAAAGAGTCCAGGAAGCGGCTAAACTTGGTTTTAAACGGGCAATTGTTCC
GAAATCCAATATTGGCGGCTGGGATTTCCCGGAAGGTATCCGCGTAGTTGGAGTAGAAACAGTAAATGATGCATTAAAAG
AGATTTTTCCACAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365KK67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.302

98.908

0.705
  radA Streptococcus pneumoniae Rx1

63.377

99.563

0.631
  radA Streptococcus pneumoniae D39

63.377

99.563

0.631
  radA Streptococcus pneumoniae R6

63.377

99.563

0.631
  radA Streptococcus pneumoniae TIGR4

63.377

99.563

0.631
  radA Streptococcus mitis NCTC 12261

63.377

99.563

0.631
  radA Streptococcus mitis SK321

63.377

99.563

0.631

Multiple sequence alignment