Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DNR44_RS01180 Genome accession   NZ_CP047673
Coordinates   235147..236097 (-) Length   316 a.a.
NCBI ID   WP_112224089.1    Uniprot ID   A0A365KRF2
Organism   Planococcus halotolerans strain Y50     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230147..241097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS01155 (DNR44_001145) - 231306..231941 (-) 636 WP_112224094.1 phosphatase PAP2 family protein -
  DNR44_RS01160 (DNR44_001150) - 232049..232351 (-) 303 WP_112224093.1 antibiotic biosynthesis monooxygenase family protein -
  DNR44_RS01165 (DNR44_001155) - 232465..233424 (-) 960 WP_112224092.1 siderophore ABC transporter substrate-binding protein -
  DNR44_RS01170 (DNR44_001160) - 233446..234207 (-) 762 WP_112224091.1 ABC transporter ATP-binding protein -
  DNR44_RS01175 (DNR44_001165) - 234204..235154 (-) 951 WP_112224090.1 iron chelate uptake ABC transporter family permease subunit -
  DNR44_RS01180 (DNR44_001170) ceuB 235147..236097 (-) 951 WP_112224089.1 ABC transporter permease Machinery gene
  DNR44_RS01185 (DNR44_001175) - 236342..237205 (-) 864 WP_112224088.1 DUF6612 family protein -
  DNR44_RS01190 (DNR44_001180) - 237405..239123 (+) 1719 WP_112224087.1 ABC transporter ATP-binding protein -
  DNR44_RS01195 (DNR44_001185) hflX 239653..240924 (-) 1272 WP_112224086.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34866.12 Da        Isoelectric Point: 10.0983

>NTDB_id=415163 DNR44_RS01180 WP_112224089.1 235147..236097(-) (ceuB) [Planococcus halotolerans strain Y50]
MKKRYLIPALFILSVISLFVGVSSISPLDLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLMFANASMIEKMAVAFVFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYLYANRFTVAGMGEDFSKNLGLKYRSIVNIGLTLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLLCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=415163 DNR44_RS01180 WP_112224089.1 235147..236097(-) (ceuB) [Planococcus halotolerans strain Y50]
ATGAAAAAAAGATATTTAATACCAGCATTATTCATACTGTCTGTCATTTCGCTGTTTGTCGGAGTTAGCAGTATCAGTCC
ATTAGATCTGCTGGATTTCCAGTCGGAAGAAACACAGATTTTCCTGATCAGCCGTCTGCCAAGGCTGGTAGCCATATTGC
TGGCGGGTGCAGGTATGAGTATGGCAGGACTCATCATGCAGCAATTGAGCCGCAATAAATTTGTGTCGCCAACGACAGCA
GGTACACTCGATGCTACAAGGCTTGGGATTCTCGTTTCAATGCTCATGTTCGCTAATGCGTCCATGATTGAGAAAATGGC
TGTAGCTTTCGTATTTGCTTTAGCGGGTACATTCCTGTTTATGCAAATTCTCAACCGCATCAAATTCAAAGATGCGATTT
TCATTCCTTTGGTCGGTTTGATGTTCGGGAATATCCTTTCTTCCATTACAACGTTTTTCGCATACCGCGCGGATGTTATC
CAGAACATGTCCGCCTGGCTGCAGGGAGATTTTTCGATGGTCATGAAAGGGAGCTACGAGCTGCTTTACATCAGTGTTCC
GGTGTTTATCATCGCTTATCTGTACGCCAACCGCTTTACGGTTGCCGGCATGGGTGAGGATTTCTCGAAGAACTTGGGAC
TGAAATACCGCAGCATCGTCAACATCGGCTTGACACTTGTTGCGCTGATTACAGCGACAGTCGTTTTGACAGTAGGCGTC
ATCCCGTTTCTCGGGTTGATCATCCCGAATATCGTCTCAATTTTCAAAGGAGACCATTTACAGAAAACATTGCCGCATAC
AGCGATGCTTGGAGCCATATTCTTGCTGCTGTGCGATATTCTAGGAAGAGTTTTGATTTACCCGTATGAAATTTCCATCA
GCCTGATGGTCGGTGTCATCGGAAGCTTCATCTTCCTCTTCTTACTGTTTAGGAGGAAGGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365KRF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

99.051

0.541

Multiple sequence alignment