Detailed information NTG0415159

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GTU60_RS14845
• Genome accession: NZ_CP047670
• Coordinates: 3241990..3243036 (-)
• Length: 348 a.a.
• NCBI ID: WP_338081612.1
• Uniprot ID: -
• Organism: Alcaligenes faecalis strain SCSIO B001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3236990..3248036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTU60_RS14820	nusB	3237088..3237603 (-)	516	WP_045931247.1	transcription antitermination factor NusB	-
GTU60_RS14825	ribH	3237557..3238075 (-)	519	WP_042488798.1	6,7-dimethyl-8-ribityllumazine synthase	-
GTU60_RS14830	ribBA	3238090..3239256 (-)	1167	WP_199264954.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
GTU60_RS14835	-	3239372..3240199 (+)	828	WP_045931249.1	IclR family transcriptional regulator	-
GTU60_RS14840	-	3240319..3241848 (+)	1530	WP_086069599.1	CYTH and CHAD domain-containing protein	-
GTU60_RS14845	pilA	3241990..3243036 (-)	1047	WP_338081612.1	signal recognition particle-docking protein FtsY	Machinery gene
GTU60_RS14850	rsmD	3243536..3244165 (+)	630	WP_045931251.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GTU60_RS14855	coaD	3244186..3244692 (+)	507	WP_063691415.1	pantetheine-phosphate adenylyltransferase	-
GTU60_RS14860	-	3244778..3245035 (+)	258	WP_009454772.1	YfhL family 4Fe-4S dicluster ferredoxin	-
GTU60_RS14865	-	3245106..3245498 (-)	393	WP_199264956.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 36639.17 Da
• Isoelectric Point: 5.1158

>NTDB_id=415159 GTU60_RS14845 WP_338081612.1 3241990..3243036(-) (pilA) [Alcaligenes faecalis strain SCSIO B001]
MPQPEPEVPPTPEPEPQPEIVPAPAPQPEPAPAPEPEAAAPVVKTSWMSRLKQGLSRTGQSLSSLFVGAKVDETLFEELE
DALLMADAGVEATEKLITALRARVRKEKVSDAAQVKQILCDILTDHLKPLEKSFPLESSKPLVVMIAGVNGAGKTTSIGK
LAHTFQEQGAKVLLAAGDTFRAAAREQLIEWGTRNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMVDTAGRLPTQLHL
MEELKKIKRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAACAQGVRPIPVY
WIGVGEGMQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1047 bp

>NTDB_id=415159 GTU60_RS14845 WP_338081612.1 3241990..3243036(-) (pilA) [Alcaligenes faecalis strain SCSIO B001]
GTGCCGCAGCCAGAACCCGAGGTGCCGCCGACTCCTGAACCGGAGCCACAGCCAGAGATTGTTCCCGCACCAGCGCCCCA
GCCTGAGCCAGCTCCGGCCCCAGAGCCAGAAGCCGCCGCACCTGTGGTGAAAACCTCCTGGATGTCCCGCCTGAAACAGG
GTTTGTCGCGTACAGGACAGAGCCTGAGCAGCCTGTTCGTCGGTGCCAAGGTTGATGAAACACTGTTCGAGGAACTGGAA
GATGCCTTGCTGATGGCAGATGCGGGCGTTGAGGCTACCGAGAAACTGATTACCGCCTTGCGTGCCCGTGTTCGCAAGGA
AAAAGTCAGTGATGCGGCTCAGGTCAAACAAATCTTGTGCGACATCCTGACTGACCACTTGAAGCCCTTGGAGAAATCGT
TCCCTCTGGAGTCGAGCAAGCCGCTGGTTGTCATGATTGCCGGGGTGAATGGTGCAGGTAAAACCACGTCTATCGGTAAA
TTGGCCCACACCTTCCAGGAGCAGGGCGCAAAAGTCTTGCTGGCCGCCGGCGATACCTTCCGTGCTGCGGCTCGTGAACA
ACTGATTGAGTGGGGCACCCGCAATAACGTCAGCGTTATTGCTCAGGATGGTGGCGACCCCGCCGCCGTGGCTTTTGATG
CGGTACATGCAGGCCGTGCACGTGATATGGGTGTGGTCATGGTGGACACTGCCGGTCGCTTGCCGACTCAGCTGCACCTG
ATGGAAGAGCTCAAGAAGATCAAGCGTGTGATTGGCAAGGCCGATGGCCAGGCTCCCCATGAAATTCTCTTGGTTGTAGA
CGGCAACACCGGCCAGAACGCCATTTCCCAGATCCGTGCGTTTGATGCGGCCTTGGGGCTGACTGGTCTGGTTGTCACCA
AGCTGGACGGTACAGCCAAAGGCGGTACGCTGGCTGCCGTTGCAGCCTGTGCGCAAGGCGTACGTCCTATCCCGGTTTAC
TGGATTGGCGTGGGCGAGGGTATGCAGGATCTGCAGGCTTTTGTGGCACGAGAGTTCGCGTCGGCCTTGTTGGGCATGAA
CGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (59-123)

• SRP54-type protein, GTPase domain (SRP54) (142-345)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.824	87.931	0.517