Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H8S71_RS18150 Genome accession   NZ_CP060417
Coordinates   3556273..3557406 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3551273..3562406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS18110 (H8S71_18105) ywnA 3551438..3551839 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  H8S71_RS18115 (H8S71_18110) ureC 3551974..3553683 (-) 1710 WP_003243090.1 urease subunit alpha -
  H8S71_RS18120 (H8S71_18115) ureB 3553680..3554054 (-) 375 WP_003227726.1 urease subunit beta -
  H8S71_RS18125 (H8S71_18120) ureA 3554051..3554368 (-) 318 WP_076457474.1 urease subunit gamma -
  H8S71_RS18130 (H8S71_18125) - 3554563..3554723 (-) 161 Protein_3536 hypothetical protein -
  H8S71_RS20590 - 3554956..3555167 (-) 212 Protein_3537 urea ABC transporter substrate-binding protein -
  H8S71_RS18140 (H8S71_18135) csbD 3555380..3555568 (-) 189 WP_003227718.1 stress response protein CsbD -
  H8S71_RS18145 (H8S71_18140) - 3555641..3556120 (-) 480 WP_003244390.1 hypothetical protein -
  H8S71_RS18150 (H8S71_18145) rapC 3556273..3557406 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  H8S71_RS18155 (H8S71_18150) moaA 3557599..3558624 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  H8S71_RS18160 (H8S71_18155) fdhD 3558640..3559428 (-) 789 WP_021480805.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  H8S71_RS18165 (H8S71_18160) - 3559661..3559822 (-) 162 WP_021480806.1 hypothetical protein -
  H8S71_RS18170 (H8S71_18165) ywmD 3559917..3560591 (-) 675 WP_003243553.1 VWA domain-containing protein -
  H8S71_RS18175 (H8S71_18170) - 3560644..3560784 (-) 141 WP_014478246.1 hypothetical protein -
  H8S71_RS18180 (H8S71_18175) ywmC 3560914..3561597 (-) 684 WP_064671477.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=415111 H8S71_RS18150 WP_014478242.1 3556273..3557406(-) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=415111 H8S71_RS18150 WP_014478242.1 3556273..3557406(-) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424