Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GUU82_RS14650 Genome accession   NZ_CP047658
Coordinates   2999101..2999730 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LD39-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994101..3004730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU82_RS14635 (GUU82_14640) helD 2994343..2996397 (-) 2055 WP_012304887.1 DNA helicase IV -
  GUU82_RS14640 (GUU82_14645) yccF 2996520..2996966 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GUU82_RS14645 (GUU82_14650) yccS 2996976..2999138 (+) 2163 WP_074478097.1 YccS family putative transporter -
  GUU82_RS14650 (GUU82_14655) sxy/tfoX 2999101..2999730 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GUU82_RS14655 (GUU82_14660) sulA 2999949..3000458 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GUU82_RS14660 (GUU82_14665) ompA 3000815..3001855 (+) 1041 WP_000750416.1 porin OmpA -
  GUU82_RS14665 (GUU82_14670) matP 3001931..3002383 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GUU82_RS14670 (GUU82_14675) ycbZ 3002569..3004329 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=415077 GUU82_RS14650 WP_000839153.1 2999101..2999730(-) (sxy/tfoX) [Escherichia coli strain LD39-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=415077 GUU82_RS14650 WP_000839153.1 2999101..2999730(-) (sxy/tfoX) [Escherichia coli strain LD39-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment