Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   H8S71_RS09070 Genome accession   NZ_CP060417
Coordinates   1745341..1745772 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740341..1750772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS09050 (H8S71_09045) spoVS 1740902..1741162 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  H8S71_RS09055 (H8S71_09050) tdh 1741428..1742471 (+) 1044 WP_064671394.1 L-threonine 3-dehydrogenase -
  H8S71_RS09060 (H8S71_09055) kbl 1742484..1743662 (+) 1179 WP_072174105.1 glycine C-acetyltransferase -
  H8S71_RS09065 (H8S71_09060) miaB 1743810..1745339 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  H8S71_RS09070 (H8S71_09065) ymcA 1745341..1745772 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  H8S71_RS09075 (H8S71_09070) cotE 1746034..1746579 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  H8S71_RS09080 (H8S71_09075) hexA 1746712..1749288 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=415048 H8S71_RS09070 WP_003231834.1 1745341..1745772(+) (ymcA) [Bacillus subtilis subsp. subtilis strain ONU 559]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=415048 H8S71_RS09070 WP_003231834.1 1745341..1745772(+) (ymcA) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment