Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H8S71_RS06695 Genome accession   NZ_CP060417
Coordinates   1288719..1289855 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283719..1294855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS06675 (H8S71_06670) uxaA 1284170..1285663 (+) 1494 WP_072174218.1 altronate dehydratase family protein -
  H8S71_RS06680 (H8S71_06675) yjnA 1285702..1286466 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  H8S71_RS06685 (H8S71_06680) bstD 1286691..1287155 (-) 465 WP_015715724.1 DinB family protein -
  H8S71_RS06690 (H8S71_06685) yjoB 1287304..1288574 (+) 1271 Protein_1258 ATPase YjoB -
  H8S71_RS06695 (H8S71_06690) rapC 1288719..1289855 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  H8S71_RS06700 (H8S71_06695) phrA 1289845..1289979 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  H8S71_RS06705 (H8S71_06700) yjpA 1290010..1290267 (-) 258 WP_003232731.1 YciI family protein -
  H8S71_RS06710 (H8S71_06705) xlyB 1290388..1291341 (+) 954 WP_187002198.1 N-acetylmuramoyl-L-alanine amidase -
  H8S71_RS06715 (H8S71_06710) yjqA 1291381..1291758 (-) 378 WP_015715726.1 PH domain-containing protein -
  H8S71_RS06720 (H8S71_06715) pghB 1291863..1292465 (+) 603 WP_161619677.1 poly-gamma-glutamate hydrolase family protein -
  H8S71_RS06725 (H8S71_06720) xpdC 1292542..1293378 (+) 837 WP_003245071.1 manganese catalase family protein -
  H8S71_RS06730 (H8S71_06725) xkdA 1293422..1294018 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  H8S71_RS06735 (H8S71_06730) xre 1294181..1294522 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=415027 H8S71_RS06695 WP_015252291.1 1288719..1289855(+) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=415027 H8S71_RS06695 WP_015252291.1 1288719..1289855(+) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTATAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418