Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   H8S71_RS06450 Genome accession   NZ_CP060417
Coordinates   1240619..1241029 (-) Length   136 a.a.
NCBI ID   WP_250621001.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235619..1246029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS06415 (H8S71_06410) - 1235693..1235977 (-) 285 Protein_1203 contact-dependent growth inhibition system immunity protein -
  H8S71_RS06420 (H8S71_06415) - 1236045..1236353 (-) 309 WP_169037439.1 hypothetical protein -
  H8S71_RS06425 (H8S71_06420) - 1236374..1238245 (-) 1872 WP_169037440.1 T7SS effector LXG polymorphic toxin -
  H8S71_RS06430 (H8S71_06425) - 1238385..1238486 (+) 102 Protein_1206 peptidoglycan-binding domain-containing protein -
  H8S71_RS06435 (H8S71_06430) - 1238517..1239176 (-) 660 WP_041850963.1 hypothetical protein -
  H8S71_RS06440 (H8S71_06435) - 1239374..1239754 (+) 381 WP_029317635.1 hypothetical protein -
  H8S71_RS06445 (H8S71_06440) - 1240192..1240338 (-) 147 WP_235701114.1 response regulator aspartate phosphatase I -
  H8S71_RS06450 (H8S71_06445) rapC 1240619..1241029 (-) 411 WP_250621001.1 aspartate phosphatase Regulator
  H8S71_RS06455 (H8S71_06450) yjcS 1241136..1241453 (+) 318 WP_072692634.1 putative quinol monooxygenase -
  H8S71_RS06460 (H8S71_06455) yjdA 1241693..1242448 (+) 756 WP_015715693.1 SDR family oxidoreductase -
  H8S71_RS06465 (H8S71_06460) yjdB 1242608..1242955 (-) 348 WP_187002192.1 Ig-like domain-containing protein -
  H8S71_RS06470 (H8S71_06465) manR 1243517..1245463 (+) 1947 WP_169037442.1 mannose transport/utilization transcriptional regulator ManR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 16236.46 Da        Isoelectric Point: 4.9711

>NTDB_id=415026 H8S71_RS06450 WP_250621001.1 1240619..1241029(-) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MYLFRTRDLVIALTYYREAEKYLDLLDKNANTDKAEFYFKMSEVYYYMKETHFSMNYAQRAYSIFKEQKDAQGNLTYGKE
MVQCQFVIFWNWLDKMCYEDALETAEKALNDAIKIGEQHLIGSAHFNVGLCYNNLE

Nucleotide


Download         Length: 411 bp        

>NTDB_id=415026 H8S71_RS06450 WP_250621001.1 1240619..1241029(-) (rapC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGTATCTTTTTAGAACGAGAGATTTAGTTATTGCTTTAACATATTATCGCGAAGCCGAAAAATATCTTGATTTATTAGA
TAAGAACGCAAATACAGATAAGGCAGAGTTCTATTTCAAAATGTCAGAAGTCTATTACTATATGAAAGAGACTCATTTTT
CAATGAATTATGCCCAGCGAGCATACTCTATATTTAAAGAACAAAAAGATGCTCAGGGGAACCTTACATATGGCAAAGAA
ATGGTCCAATGTCAGTTTGTTATCTTTTGGAACTGGCTAGATAAAATGTGTTATGAGGACGCTTTAGAAACAGCTGAAAA
AGCCTTAAATGATGCTATAAAAATAGGGGAGCAACATTTAATTGGTTCAGCTCATTTTAATGTGGGATTATGTTATAATA
ATCTTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.045

98.529

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

38.806

98.529

0.382