Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GT347_RS12120 Genome accession   NZ_CP047650
Coordinates   2613259..2614818 (-) Length   519 a.a.
NCBI ID   WP_160552191.1    Uniprot ID   A0A857J410
Organism   Xylophilus rhododendri strain KACC 21265     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608259..2619818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT347_RS12095 (GT347_12095) - 2609162..2609617 (-) 456 WP_229722851.1 putative toxin-antitoxin system toxin component, PIN family -
  GT347_RS12100 (GT347_12100) - 2609614..2610861 (-) 1248 WP_160552187.1 class I SAM-dependent RNA methyltransferase -
  GT347_RS12105 (GT347_12105) - 2610943..2611590 (+) 648 WP_160552188.1 DUF4197 domain-containing protein -
  GT347_RS12110 (GT347_12110) - 2611594..2612862 (-) 1269 WP_229722852.1 type II toxin-antitoxin system HipA family toxin -
  GT347_RS12115 (GT347_12115) - 2612843..2613184 (-) 342 WP_160552190.1 helix-turn-helix transcriptional regulator -
  GT347_RS12120 (GT347_12120) rpoN/rpoN1 2613259..2614818 (-) 1560 WP_160552191.1 RNA polymerase factor sigma-54 Machinery gene
  GT347_RS12125 (GT347_12125) lptB 2614958..2615722 (-) 765 WP_160552192.1 LPS export ABC transporter ATP-binding protein -
  GT347_RS12130 (GT347_12130) lptA 2615719..2616405 (-) 687 WP_160552193.1 lipopolysaccharide transport periplasmic protein LptA -
  GT347_RS12135 (GT347_12135) - 2616513..2617193 (-) 681 WP_160552194.1 thiol:disulfide interchange protein DsbA/DsbL -
  GT347_RS12140 (GT347_12140) - 2617244..2617948 (-) 705 WP_160555321.1 SPOR domain-containing protein -
  GT347_RS12145 (GT347_12145) argS 2617987..2619672 (-) 1686 WP_160552195.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 56920.25 Da        Isoelectric Point: 4.6904

>NTDB_id=415018 GT347_RS12120 WP_160552191.1 2613259..2614818(-) (rpoN/rpoN1) [Xylophilus rhododendri strain KACC 21265]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLEASLDEPVQDFGSVTPEAPASEDDSYHTSADTS
STSTADTAGESEGEGGMEAEPSWDGEGGTNEVVADDGEWGGDAPARQNNLGGDEAVDATELARSQESLTAHLHRQALSLR
LSPEDSAALRFLIESLNDDGYLEDSLPSLALGLAGPDEEQSEEVEELVQRFTMALRLLQHLEPAGVGARDLRECLTLQLK
ALRGAGTVPPALVDAALAICAQPMELLARRDVKRLVTACGVEDELVRAAMGLIARLEPKPGRRFVDVERNIVIPDVLVQK
IGRGPQPRFRVQLNPDVMPRLKVHDIYASALKQHKGEGSAALQQRLQEARWFIKNIQQRFDTILRVSNAIVERQKNFFVH
GELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTFELKYFFGSALGTETGGNASSTAVRALIKQFVSSEDLRKPL
SDSQISDMLKEQGIECARRTVAKYRDALRIAPANLRKSL

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=415018 GT347_RS12120 WP_160552191.1 2613259..2614818(-) (rpoN/rpoN1) [Xylophilus rhododendri strain KACC 21265]
TTGAAGCAAGGTCTGTCTCTTCGGGTTTCGCAGCATCTCGCGCTGACGCCGCAACTGCAGCAGTCGATCCGGCTGCTGCA
GCTTTCCACGCTCGAACTGAGCCAGGAAGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAAGCCAGCCTGGACGAGC
CGGTCCAGGACTTCGGCTCCGTCACGCCCGAAGCCCCCGCATCCGAGGACGACAGCTACCACACCAGCGCCGACACCAGC
AGCACCAGCACGGCCGACACCGCCGGTGAGTCCGAGGGCGAGGGCGGCATGGAGGCCGAACCCAGCTGGGACGGCGAAGG
CGGCACCAACGAGGTCGTGGCCGACGACGGCGAATGGGGCGGCGACGCCCCCGCGCGCCAGAACAACCTGGGCGGCGACG
AAGCCGTCGATGCCACCGAACTGGCGCGCAGCCAGGAGTCGCTCACCGCCCATCTGCACCGCCAGGCCCTGTCGCTGCGC
CTGTCGCCCGAGGACAGCGCTGCCCTGCGTTTTCTCATCGAATCGCTCAACGACGACGGCTATCTGGAAGACTCCCTGCC
CTCGCTGGCGCTCGGCCTGGCCGGCCCCGACGAGGAGCAGTCCGAGGAGGTCGAGGAACTGGTGCAGCGCTTCACCATGG
CCCTGCGCCTGCTGCAGCACCTGGAGCCGGCCGGCGTGGGCGCGCGCGATTTGCGCGAATGCCTCACGCTGCAGCTCAAG
GCCCTGCGCGGGGCCGGCACCGTCCCGCCCGCGCTGGTCGATGCCGCCCTGGCGATCTGCGCCCAGCCCATGGAACTGCT
GGCCCGGCGCGACGTGAAGCGCCTGGTCACCGCCTGCGGCGTGGAAGACGAGCTGGTGCGCGCCGCCATGGGCCTGATCG
CCCGGCTGGAACCCAAGCCCGGGCGCCGCTTCGTGGACGTGGAGCGCAACATCGTCATCCCCGACGTGCTGGTGCAGAAG
ATCGGCCGCGGCCCGCAGCCGCGCTTCCGGGTGCAGCTCAACCCCGACGTGATGCCGCGGCTGAAGGTGCACGACATCTA
CGCCAGCGCCCTCAAGCAGCACAAGGGCGAGGGCAGCGCCGCCCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCA
AGAACATCCAGCAGCGCTTCGACACCATCCTGCGGGTGTCCAACGCCATCGTCGAGCGGCAGAAGAACTTCTTCGTGCAC
GGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTGGGCCTGCACGAATCCACCATCAGCCGGGT
GACCACCGCCAAATACATGTCCACGCCCTTCGGCACCTTCGAGCTGAAGTATTTCTTCGGCTCGGCCCTGGGCACCGAGA
CCGGCGGCAACGCGTCGAGCACGGCGGTGCGGGCGCTGATCAAGCAGTTCGTCAGCTCCGAGGACCTGCGCAAGCCGCTG
TCGGACAGCCAGATCTCCGACATGCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACCGTGGCCAAGTACCGGGATGC
CCTGCGCATCGCGCCGGCCAATTTGCGCAAGTCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-347)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(361-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A857J410

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.143

100

0.538

Multiple sequence alignment