Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KNP414_RS31635 Genome accession   NC_015690
Coordinates   7732161..7732556 (+) Length   131 a.a.
NCBI ID   WP_413783347.1    Uniprot ID   -
Organism   Paenibacillus mucilaginosus KNP414     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 7727161..7737556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNP414_RS31610 (KNP414_07032) - 7727399..7727968 (-) 570 WP_013920686.1 GNAT family N-acetyltransferase -
  KNP414_RS31615 (KNP414_07035) trxB 7728355..7729308 (+) 954 WP_013920689.1 thioredoxin-disulfide reductase -
  KNP414_RS31625 (KNP414_07036) - 7730031..7731005 (-) 975 WP_013920690.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  KNP414_RS31630 (KNP414_07037) - 7731187..7731981 (+) 795 WP_013920691.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  KNP414_RS31635 (KNP414_07038) nucA/comI 7732161..7732556 (+) 396 WP_413783347.1 sporulation protein Machinery gene
  KNP414_RS31640 (KNP414_07039) - 7732619..7733125 (+) 507 WP_013920693.1 competence protein ComJ -
  KNP414_RS31645 (KNP414_07040) - 7733369..7734043 (+) 675 WP_013920694.1 hypothetical protein -
  KNP414_RS31650 (KNP414_07041) - 7734115..7734942 (-) 828 WP_041617565.1 sugar phosphate isomerase/epimerase family protein -
  KNP414_RS31655 (KNP414_07042) - 7735038..7735517 (-) 480 WP_013920696.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14222.66 Da        Isoelectric Point: 4.3998

>NTDB_id=41501 KNP414_RS31635 WP_413783347.1 7732161..7732556(+) (nucA/comI) [Paenibacillus mucilaginosus KNP414]
MTAALAGGLFTLHTSQAAAAGEYDAVLYFPFNKYPYTGDHIRDAIAAGHPDVCTIDRDGADENRAESLQGIPTKTGYDRD
EWPMAMCEEGGAGADVRYVPYSDNRGSGSWVGNQLSVYPDGTRIKFIMSYN

Nucleotide


Download         Length: 396 bp        

>NTDB_id=41501 KNP414_RS31635 WP_413783347.1 7732161..7732556(+) (nucA/comI) [Paenibacillus mucilaginosus KNP414]
ATGACCGCCGCTCTCGCCGGAGGCCTCTTCACCCTGCATACGAGCCAGGCAGCTGCTGCCGGAGAGTACGACGCCGTCCT
GTATTTCCCGTTCAACAAGTATCCGTACACGGGAGACCATATCCGTGATGCGATCGCCGCCGGCCATCCGGACGTCTGCA
CGATCGACCGCGACGGAGCCGACGAGAACCGCGCCGAATCGCTCCAGGGCATCCCCACGAAGACAGGCTATGACCGGGAC
GAGTGGCCGATGGCCATGTGCGAGGAAGGCGGCGCCGGCGCCGATGTCCGCTACGTGCCTTACTCCGACAACCGGGGCTC
GGGCTCCTGGGTAGGCAACCAGCTCTCCGTTTACCCGGACGGCACCCGGATCAAGTTCATCATGTCGTATAACTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(36-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

54.4

95.42

0.519

Multiple sequence alignment