Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   H8S71_RS05300 Genome accession   NZ_CP060417
Coordinates   1029989..1032880 (+) Length   963 a.a.
NCBI ID   WP_187002146.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024989..1037880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS05275 (H8S71_05270) yhaR 1025403..1026170 (+) 768 WP_187002145.1 enoyl-CoA hydratase -
  H8S71_RS05280 (H8S71_05275) yhzD 1026191..1026376 (-) 186 WP_003233264.1 YhzD family protein -
  H8S71_RS05285 (H8S71_05280) yhaQ 1026503..1027399 (+) 897 WP_003233262.1 ABC transporter ATP-binding protein -
  H8S71_RS05290 (H8S71_05285) yhaP 1027392..1028651 (+) 1260 WP_003244912.1 ABC transporter permease -
  H8S71_RS05295 (H8S71_05290) yhaO 1028758..1029984 (+) 1227 WP_046380897.1 exonuclease SbcCD subunit D -
  H8S71_RS05300 (H8S71_05295) sbcE 1029989..1032880 (+) 2892 WP_187002146.1 DNA repair/recombination ATPase SbcE Machinery gene
  H8S71_RS05305 (H8S71_05300) yhaM 1032954..1033898 (+) 945 WP_187002147.1 3'-5' exoribonuclease YhaM -
  H8S71_RS05310 (H8S71_05305) yhaL 1034023..1034235 (+) 213 WP_003233252.1 sporulation protein YhaL -
  H8S71_RS05315 (H8S71_05310) prsA 1034275..1035159 (-) 885 WP_015715600.1 peptidylprolyl isomerase -
  H8S71_RS05320 (H8S71_05315) yhzE1 1035319..1035405 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  H8S71_RS05325 (H8S71_05320) yhzE2 1035530..1035616 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  H8S71_RS05330 (H8S71_05325) - 1035669..1035851 (-) 183 WP_024571667.1 hypothetical protein -
  H8S71_RS05335 (H8S71_05330) yhaJ 1035959..1036477 (-) 519 WP_003245590.1 DUF3267 domain-containing protein -
  H8S71_RS05340 (H8S71_05335) yhaI 1036685..1037026 (+) 342 WP_009966921.1 YhaI family protein -
  H8S71_RS05345 (H8S71_05340) scoC 1037023..1037634 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 110949.88 Da        Isoelectric Point: 6.0120

>NTDB_id=415007 H8S71_RS05300 WP_187002146.1 1029989..1032880(+) (sbcE) [Bacillus subtilis subsp. subtilis strain ONU 559]
MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSCGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILEDSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLCPVNQSQ
DISISDALQTLRKNIEREKEIEKKKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETTKKWASIQMIKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMRGDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSKLPFQLDDSFVHFDQERLKRALHVLYDLTEGGRQILYFTCHDHVKDAFHSGQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=415007 H8S71_RS05300 WP_187002146.1 1029989..1032880(+) (sbcE) [Bacillus subtilis subsp. subtilis strain ONU 559]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTGACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAGTATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGTGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACATTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAGACAGCCAAAGAAA
AGATAAAGAAGCTGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACAGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCCCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTTGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCAGACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGAAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGATCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGACTAAAAAATGGGCCTCGATACAAATGATCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCCCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCGTGGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTCTGGCCGTTACGCGCCAGGATGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGCATTACATGTTCTGTATGATTTAA
CGGAAGGCGGAAGGCAGATTTTGTATTTTACATGCCATGACCATGTGAAAGATGCATTTCATAGCGGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.131

100

0.981

Multiple sequence alignment