Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   H8S71_RS02415 Genome accession   NZ_CP060417
Coordinates   475962..476396 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470962..481396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS02385 (H8S71_02380) ydaD 471609..472469 (+) 861 WP_187002070.1 SDR family oxidoreductase -
  H8S71_RS02390 (H8S71_02385) lyxE 472485..472988 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  H8S71_RS02395 (H8S71_02390) ydaF 473074..473625 (+) 552 WP_187002071.1 GNAT family protein -
  H8S71_RS02400 (H8S71_02395) ydaG 473703..474125 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  H8S71_RS02405 (H8S71_02400) amj 474631..475440 (+) 810 WP_015715258.1 lipid II flippase Amj -
  H8S71_RS02410 (H8S71_02405) ydzA 475487..475777 (-) 291 WP_064671958.1 DUF3817 domain-containing protein -
  H8S71_RS02415 (H8S71_02410) lrpC 475962..476396 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  H8S71_RS02420 (H8S71_02415) topB 476461..478644 (+) 2184 WP_187002072.1 DNA topoisomerase III -
  H8S71_RS02425 (H8S71_02420) ephJ 478847..479935 (+) 1089 WP_187002073.1 lipoprotein YdaJ -
  H8S71_RS02430 (H8S71_02425) epsK 479916..480767 (+) 852 WP_187002074.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=414996 H8S71_RS02415 WP_003246585.1 475962..476396(+) (lrpC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=414996 H8S71_RS02415 WP_003246585.1 475962..476396(+) (lrpC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1