Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GQ601_RS10665 Genome accession   NZ_CP047646
Coordinates   2244487..2245209 (-) Length   240 a.a.
NCBI ID   WP_212593106.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 19/Msa0875     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2239487..2250209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ601_RS10650 (GQ601_10700) - 2240574..2241524 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  GQ601_RS10655 (GQ601_10705) - 2241673..2243157 (+) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  GQ601_RS10660 (GQ601_10710) - 2243154..2244113 (+) 960 WP_001253294.1 carbohydrate kinase -
  GQ601_RS10665 (GQ601_10715) agrA 2244487..2245209 (-) 723 WP_212593106.1 LytTR family DNA-binding domain-containing protein Regulator
  GQ601_RS10670 (GQ601_10720) - 2245228..2246520 (-) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  GQ601_RS10675 (GQ601_10725) - 2246545..2246685 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  GQ601_RS10680 (GQ601_10730) agrB 2246682..2247251 (-) 570 WP_001105708.1 accessory gene regulator AgrB -
  GQ601_RS13545 hld 2247541..2247621 (+) 81 WP_000046022.1 delta-hemolysin -
  GQ601_RS10690 (GQ601_10740) - 2248223..2249008 (-) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  GQ601_RS10695 (GQ601_10745) - 2249316..2249942 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28209.26 Da        Isoelectric Point: 6.3009

>NTDB_id=414937 GQ601_RS10665 WP_212593106.1 2244487..2245209(-) (agrA) [Staphylococcus aureus strain 19/Msa0875]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 723 bp        

>NTDB_id=414937 GQ601_RS10665 WP_212593106.1 2244487..2245209(-) (agrA) [Staphylococcus aureus strain 19/Msa0875]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAAT
CTATTGATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.167

100

0.992

Multiple sequence alignment