Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   H8A93_RS06035 Genome accession   NZ_CP060392
Coordinates   1291152..1291661 (-) Length   169 a.a.
NCBI ID   WP_033959568.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1903031130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286152..1296661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8A93_RS06015 (H8A93_06015) - 1286539..1286748 (-) 210 WP_058172883.1 hypothetical protein -
  H8A93_RS06020 (H8A93_06020) - 1286812..1288860 (-) 2049 WP_058172882.1 ParB/RepB/Spo0J family partition protein -
  H8A93_RS06025 (H8A93_06025) - 1288940..1289767 (-) 828 WP_058172881.1 DUF932 domain-containing protein -
  H8A93_RS06030 (H8A93_06030) - 1290481..1290873 (-) 393 WP_058172880.1 hypothetical protein -
  H8A93_RS06035 (H8A93_06035) radC 1291152..1291661 (-) 510 WP_033959568.1 DNA repair protein RadC Machinery gene
  H8A93_RS06040 (H8A93_06040) - 1292030..1293100 (-) 1071 WP_058172879.1 hypothetical protein -
  H8A93_RS06045 (H8A93_06045) - 1293145..1295400 (-) 2256 WP_058172878.1 ThiF family adenylyltransferase -
  H8A93_RS06050 (H8A93_06050) - 1295397..1296590 (-) 1194 WP_033959564.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18741.29 Da        Isoelectric Point: 6.7631

>NTDB_id=414889 H8A93_RS06035 WP_033959568.1 1291152..1291661(-) (radC) [Pseudomonas aeruginosa strain 1903031130]
MSQLSIPSFDSPLMLRDSRGRYRQASADQILEAARQVIDQKMQRGDEFTSPAAVKDYLRAKLAGFEHEVFAVLFLDTRHR
LIDYAEMFRGTIDSAEVHPREVVKEALRLNAAAVIISHNHPSGNPEPSAADRAMTSQLRQALALVDVRTLDHIIVAGGTT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=414889 H8A93_RS06035 WP_033959568.1 1291152..1291661(-) (radC) [Pseudomonas aeruginosa strain 1903031130]
ATGTCGCAACTGTCCATTCCTTCCTTCGATTCCCCGTTGATGCTGCGTGACTCGCGCGGGCGCTACCGTCAGGCATCGGC
CGACCAGATTCTCGAAGCCGCGCGCCAGGTCATCGACCAGAAGATGCAGCGCGGTGACGAGTTCACTTCGCCGGCGGCGG
TCAAGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAAGTCTTCGCGGTGTTGTTCCTCGATACGCGCCATCGG
CTGATCGACTATGCCGAGATGTTCCGCGGCACGATCGACAGCGCGGAGGTTCATCCGCGCGAAGTGGTGAAGGAGGCGCT
GCGGCTCAACGCGGCGGCGGTCATCATTTCGCACAATCACCCGAGCGGGAACCCCGAGCCGAGCGCGGCCGACAGGGCAA
TGACCTCGCAGCTTCGGCAGGCGCTGGCGCTGGTGGACGTTCGCACGTTGGATCACATCATCGTGGCGGGCGGCACCACC
ACGTCTTTCGCCGAACGTGGCTTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373

Multiple sequence alignment