Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GNE05_RS13235 Genome accession   NZ_CP047644
Coordinates   2697996..2698763 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. AM1(2019)     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2692996..2703763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS13215 (GNE05_13215) - 2693198..2694010 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  GNE05_RS13220 (GNE05_13220) ccpN 2694036..2694674 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  GNE05_RS13225 (GNE05_13225) glyS 2694775..2696814 (-) 2040 WP_021494328.1 glycine--tRNA ligase subunit beta -
  GNE05_RS13230 (GNE05_13230) glyQ 2696807..2697694 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  GNE05_RS13235 (GNE05_13235) recO 2697996..2698763 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  GNE05_RS13240 (GNE05_13240) - 2698800..2698943 (-) 144 WP_007408286.1 YqzL family protein -
  GNE05_RS13245 (GNE05_13245) era 2699100..2700005 (-) 906 WP_007408285.1 GTPase Era -
  GNE05_RS13250 (GNE05_13250) - 2699986..2700396 (-) 411 WP_003152976.1 cytidine deaminase -
  GNE05_RS13255 (GNE05_13255) - 2700520..2700894 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  GNE05_RS13260 (GNE05_13260) ybeY 2700875..2701348 (-) 474 WP_053284930.1 rRNA maturation RNase YbeY -
  GNE05_RS13265 (GNE05_13265) - 2701349..2703481 (-) 2133 WP_160182876.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=414884 GNE05_RS13235 WP_007408287.1 2697996..2698763(-) (recO) [Bacillus sp. AM1(2019)]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=414884 GNE05_RS13235 WP_007408287.1 2697996..2698763(-) (recO) [Bacillus sp. AM1(2019)]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment