Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GNE05_RS12730 Genome accession   NZ_CP047644
Coordinates   2612715..2613515 (-) Length   266 a.a.
NCBI ID   WP_061862382.1    Uniprot ID   -
Organism   Bacillus sp. AM1(2019)     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607715..2618515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS12705 (GNE05_12705) - 2608258..2608890 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  GNE05_RS21030 - 2609187..2609324 (+) 138 WP_014470646.1 hypothetical protein -
  GNE05_RS12710 (GNE05_12710) - 2609418..2610536 (+) 1119 WP_032863662.1 NADH-dependent flavin oxidoreductase -
  GNE05_RS12715 (GNE05_12715) - 2610663..2610875 (+) 213 WP_029973891.1 spore germination protein -
  GNE05_RS12720 (GNE05_12720) - 2611001..2611213 (+) 213 WP_014418351.1 spore germination protein -
  GNE05_RS12725 (GNE05_12725) alr 2611388..2612569 (+) 1182 WP_021494302.1 alanine racemase -
  GNE05_RS12730 (GNE05_12730) spo0A 2612715..2613515 (-) 801 WP_061862382.1 sporulation transcription factor Spo0A Regulator
  GNE05_RS12735 (GNE05_12735) spoIVB 2613796..2615076 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  GNE05_RS12740 (GNE05_12740) recN 2615240..2616970 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  GNE05_RS12745 (GNE05_12745) argR 2617002..2617451 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  GNE05_RS12750 (GNE05_12750) - 2617548..2618393 (-) 846 WP_014418353.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=414874 GNE05_RS12730 WP_061862382.1 2612715..2613515(-) (spo0A) [Bacillus sp. AM1(2019)]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESEIEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=414874 GNE05_RS12730 WP_061862382.1 2612715..2613515(-) (spo0A) [Bacillus sp. AM1(2019)]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGATCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATCTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.255

100

0.966

Multiple sequence alignment