Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GNE05_RS11665 Genome accession   NZ_CP047644
Coordinates   2366985..2367593 (+) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus sp. AM1(2019)     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2361985..2372593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS11625 (GNE05_11625) - 2363038..2363544 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  GNE05_RS11630 (GNE05_11630) - 2363683..2364096 (+) 414 WP_017418017.1 hypothetical protein -
  GNE05_RS11635 (GNE05_11635) - 2364126..2364560 (-) 435 WP_160182832.1 YppG family protein -
  GNE05_RS11640 (GNE05_11640) - 2364747..2364929 (+) 183 WP_003153532.1 YppF family protein -
  GNE05_RS11645 (GNE05_11645) - 2364968..2365336 (-) 369 WP_007409492.1 YppE family protein -
  GNE05_RS11650 (GNE05_11650) - 2365382..2365627 (-) 246 WP_039063257.1 DUF5446 family protein -
  GNE05_RS11655 (GNE05_11655) sspM 2365833..2365937 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  GNE05_RS11660 (GNE05_11660) - 2365981..2366943 (-) 963 WP_015417701.1 DUF2515 domain-containing protein -
  GNE05_RS11665 (GNE05_11665) recU 2366985..2367593 (+) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  GNE05_RS11670 (GNE05_11670) - 2367632..2370406 (+) 2775 WP_160182833.1 PBP1A family penicillin-binding protein -
  GNE05_RS11675 (GNE05_11675) - 2370484..2370975 (-) 492 WP_160182834.1 hypothetical protein -
  GNE05_RS11680 (GNE05_11680) nth 2370972..2371631 (-) 660 WP_007612187.1 endonuclease III -
  GNE05_RS11685 (GNE05_11685) - 2371650..2372348 (-) 699 WP_003153516.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=414873 GNE05_RS11665 WP_015417702.1 2366985..2367593(+) (recU) [Bacillus sp. AM1(2019)]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=414873 GNE05_RS11665 WP_015417702.1 2366985..2367593(+) (recU) [Bacillus sp. AM1(2019)]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAAATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCGCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment