Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GNE05_RS07445 Genome accession   NZ_CP047644
Coordinates   1427508..1427972 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. AM1(2019)     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422508..1432972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNE05_RS07430 (GNE05_07430) - 1422989..1424809 (+) 1821 WP_160182629.1 PAS domain-containing protein -
  GNE05_RS07435 (GNE05_07435) - 1424834..1426003 (-) 1170 WP_007611083.1 aminotransferase A -
  GNE05_RS20970 - 1426204..1426365 (-) 162 WP_007409608.1 hypothetical protein -
  GNE05_RS07440 (GNE05_07440) cheV 1426554..1427465 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  GNE05_RS07445 (GNE05_07445) kre 1427508..1427972 (-) 465 WP_003154622.1 YkyB family protein Regulator
  GNE05_RS07450 (GNE05_07450) - 1428095..1429387 (-) 1293 WP_014417606.1 MFS transporter -
  GNE05_RS07455 (GNE05_07455) - 1429463..1429957 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  GNE05_RS07460 (GNE05_07460) - 1430032..1430895 (-) 864 WP_160182630.1 metallophosphoesterase -
  GNE05_RS07465 (GNE05_07465) fadH 1431040..1431804 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  GNE05_RS07470 (GNE05_07470) - 1431918..1432475 (+) 558 WP_160182631.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=414865 GNE05_RS07445 WP_003154622.1 1427508..1427972(-) (kre) [Bacillus sp. AM1(2019)]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=414865 GNE05_RS07445 WP_003154622.1 1427508..1427972(-) (kre) [Bacillus sp. AM1(2019)]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment