Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H7X63_RS10040 Genome accession   NZ_CP060285
Coordinates   2122474..2123109 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain XYAB2018     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2117474..2128109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X63_RS10015 - 2117530..2118510 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  H7X63_RS10020 kdsB 2118522..2119283 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7X63_RS10025 lpxK 2119293..2120303 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  H7X63_RS10030 msbA 2120306..2122033 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  H7X63_RS10035 - 2122030..2122458 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  H7X63_RS10040 exbB 2122474..2123109 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H7X63_RS10045 - 2123159..2124046 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  H7X63_RS10050 - 2124043..2124825 (-) 783 WP_000057212.1 ParA family protein -
  H7X63_RS10055 rsmG 2124847..2125479 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H7X63_RS10060 murU 2125567..2126256 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  H7X63_RS10065 - 2126256..2127269 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=414839 H7X63_RS10040 WP_000264037.1 2122474..2123109(-) (exbB) [Acinetobacter baumannii strain XYAB2018]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=414839 H7X63_RS10040 WP_000264037.1 2122474..2123109(-) (exbB) [Acinetobacter baumannii strain XYAB2018]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment