Detailed information NTG0414747

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GU333_RS08870
• Genome accession: NZ_CP047630
• Coordinates: 1810686..1813130 (-)
• Length: 814 a.a.
• NCBI ID: WP_167842341.1
• Uniprot ID: -
• Organism: Lactococcus raffinolactis strain Lr_18_12S
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1805686..1818130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GU333_RS08850 (GU333_08820)	-	1806326..1807240 (-)	915	WP_167842339.1	magnesium transporter CorA family protein	-
GU333_RS08855 (GU333_08825)	-	1807264..1808388 (-)	1125	WP_096039505.1	VanZ family protein	-
GU333_RS08860 (GU333_08830)	eno	1808488..1809813 (-)	1326	WP_061774869.1	phosphopyruvate hydratase	-
GU333_RS08865 (GU333_08835)	raiA	1810029..1810595 (-)	567	WP_167842340.1	ribosome-associated translation inhibitor RaiA	-
GU333_RS08870 (GU333_08840)	clpC	1810686..1813130 (-)	2445	WP_167842341.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
GU333_RS08875 (GU333_08845)	-	1813159..1813602 (-)	444	WP_061774879.1	CtsR family transcriptional regulator	-
GU333_RS08880 (GU333_08850)	-	1813989..1814690 (+)	702	WP_167842342.1	XRE family transcriptional regulator	-
GU333_RS08885 (GU333_08855)	-	1814737..1816182 (+)	1446	WP_167842343.1	Y-family DNA polymerase	-
GU333_RS08890	-	1816179..1816349 (+)	171	WP_167842344.1	hypothetical protein	-
GU333_RS08895 (GU333_08860)	-	1816385..1816786 (+)	402	WP_061774864.1	YbgA family protein	-
GU333_RS08900 (GU333_08865)	-	1816770..1817132 (+)	363	WP_061774863.1	TIGR02328 family protein	-
GU333_RS08905 (GU333_08870)	greA	1817221..1817703 (-)	483	WP_003140218.1	transcription elongation factor GreA	-

Sequence

Protein

• Length: 814 a.a.
• Molecular weight: 89569.33 Da
• Isoelectric Point: 5.6559

>NTDB_id=414747 GU333_RS08870 WP_167842341.1 1810686..1813130(-) (clpC) [Lactococcus raffinolactis strain Lr_18_12S]
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLTELGNMNVKKIAKKAVTPMGKR
DIASGVAAASITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIAILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
GDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVA
VGVSKGELTIKVID

Nucleotide

• Length: 2445 bp

>NTDB_id=414747 GU333_RS08870 WP_167842341.1 1810686..1813130(-) (clpC) [Lactococcus raffinolactis strain Lr_18_12S]
ATGACACAAAATTATACGCACATACTTGAAGATATTCTCAAAACAGCTCGCGTTTTTGCGGCGGGCAATGGTTATGATTA
TGCAGAAACATCACACGTCTTGGCGGGGATGTTATCGAGTAACGATAGCTTTGGCCAAAACATTCTAACGGATCACGATG
TGACGATTGAAATGGCGCTAGATGAAATCGAACAACACCAATTACCCGAAAAAATGCAAACGGTTCAAAATATCCAATTT
TCACCTAAGGTCGAACAGCTCTTGCTTGAAGCAGATGCACTTGCAGCTCAAAATCATTTGGCAGAAACAGGGTCTGAACA
CTTGCTCTATGTCATCTTGACTGATGATGACAATGTTGCCAAGAAACTTTTGGAACTAAACAAAATCAAAATTACTGAAA
TCGTTAAAGACTTAACTGAGCTCGGTAATATGAATGTCAAAAAAATAGCTAAAAAAGCGGTCACACCGATGGGAAAACGC
GATATCGCATCGGGTGTTGCGGCGGCAAGTATTACACCAACGCTAGATTCAGTGGCGCGTGATGTGACGGAAGATGCTAG
ACAAGGACGCATTGATCCGATGATTGGTCGGGATAAGGAAATTGAGCGCGTGATTCACATTTTGAGTCGCCGGACAAAAA
ATAATCCTGTCCTAGTTGGTGAACCTGGTGTTGGTAAATCAGCTATTATCGAAGGCTTGGCGCAACGTATGATTGATGGC
AATATCCCTGCAAATATGCAAGGTGTACGTCTTATGTCACTTAATATTGCTAATGTGGTTGCCGGTACTAAATTCCGCGG
AGAATTTGAAGACCGGATGACTGCGATTGTTGATGAAGTCAGCCAAGATGCAAATACTATCGTTTTTGTCGATGAGCTAC
ATACGATCGTCGGTGCTGGTGGCGGAACGGATTCTGTTACCGATGCCTCAAACATTATGAAACCTGCACTAGCTCGTGGT
GAGTTTCAGCTGATTGGCGCAACGACCTTTAACGAATACCAAAAATACATCGAAAAAGATGCTGCTCTGGAACGTCGCTT
TGCAAAAGTTACTGTTGAAGAGCCATCTTCAGACGAATCAATTGCAATTCTACAAGGTCTTCAAAGCAAATTTGAAGCCT
TTCATCAGGTAAATTTTGACGCTGATGCAGTCAAGGCAGCGGTTCAGCTCAGTGTTCGCTATATGCCAAGTCGCAGACTG
CCGGATAAGGCCATTGACTTACTCGATGAAGCAGCTGCTGCCGTTAAAATTTCAGCTAAAAATAATTTATCCGAACAAAG
TAAGCTAGATAAAAAAGCATCACAGCTTGATGAACAGTTACAAGAAGCGATTATCAATCAAGATTTTGTGCTAGCTAAAA
GCTTAAACAAAGATCTTCAAAAACTTGAAGCCAAACGTGAGAAACTAACGGTTAAAACAAAGTCGTCTCGTGTGAGCGAA
GGTGATGTCTTTGCGGTTGTGTCTAACTTGACTGGCGTGCCTGTCACACAGATGAGCCAAAGTGAGATGACGCGTTTGAT
TAACTTAGAAAAAGAACTCCATAAACGCGTTATCGGTCAAAGCGAAGCCGTTACAGCTGTTGCTAGTGCTATCCGTCGTA
GTCGTTCAGGCATCTCAGATGACAGACGTCCTATGGGTTCCTTCATGTTCTTGGGGCCTACCGGTGTCGGGAAGACAGAG
CTTGCTAAAGCTCTGGCAGAGACCGTTTTCGGCGATGAAAACAGCATGATTCGTATCGATATGAGCGAATATATGGAGAA
ATTTAACACCAGTCGTTTAGTTGGAGCACCTCCTGGCTATGTTGGCTATGACGAGGGCGGTCAGCTAACCGAGCAGGTGC
GCAACAAGCCTTATGCTGTCGTCCTATTTGACGAGGCTGAGAAAGCCCATCCGGATGTCTTTAACCTCCTGCTCCAAATC
CTTGATGACGGCTTCATCACGGATGGTAAGGGGCGCAAGGTAGACTTCCGCAACACAATCATCATCATGACCAGTAACTT
GGGTGCGACCTCATTACGCGACGATAAGACGGTCGGATTTGGTGCAGCCAATGCCTCAACCGACTACGTCGCCATGAAGT
CTAGAATTTTAGAAGAGTTGAAAAAACGGTATCGCCCAGAGTTTCTCAACCGTATCGATGAAAGCATTGTTTTCCACCCA
CTTTCTGAGCAGGAATTATCAGATATCGTAAAAATCATGGCTAAACCATTGATTAAACGTTTGGCAGAACGTCACATCAC
CTTGAAACTTTCTGCCACTGCCTATCAGCTTATCGCTAAAAATGGCTTTGAACCAGAATATGGGGCCCGTCCAATCAGAA
AAGCTTTGGAGAAAAAACTTGAGAATCCTCTGTCGGATAAAATTTTGTCAGGCGAAATTAAGGCTGGAAATAGTGTGGCA
GTAGGCGTTTCCAAAGGTGAGTTGACAATCAAAGTTATTGATTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (357-456)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-801)

• ATPase family associated with various cellular activities (AAA) (AAA) (217-334)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-65)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	62.222	99.509	0.619
clpC	Streptococcus pneumoniae Rx1	49.337	100	0.502
clpC	Streptococcus pneumoniae D39	49.337	100	0.502
clpC	Streptococcus thermophilus LMD-9	49.041	100	0.502
clpC	Streptococcus pneumoniae TIGR4	49.216	100	0.501
clpC	Streptococcus thermophilus LMG 18311	48.801	100	0.5
clpC	Streptococcus mutans UA159	47.368	100	0.486
clpC	Bacillus subtilis subsp. subtilis str. 168	47.99	100	0.484
clpE	Streptococcus pneumoniae TIGR4	46.782	78.256	0.366
clpE	Streptococcus pneumoniae Rx1	46.782	78.256	0.366
clpE	Streptococcus pneumoniae D39	46.782	78.256	0.366
clpE	Streptococcus pneumoniae R6	46.782	78.256	0.366
clpE	Streptococcus mutans UA159	46.178	78.747	0.364