Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GU333_RS02945 Genome accession   NZ_CP047630
Coordinates   598787..599503 (-) Length   238 a.a.
NCBI ID   WP_167841911.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 593787..604503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS02930 (GU333_02925) - 594564..595523 (+) 960 WP_061774957.1 CdaR family protein -
  GU333_RS02935 (GU333_02930) glmM 595597..596952 (+) 1356 WP_167841910.1 phosphoglucosamine mutase -
  GU333_RS02940 (GU333_02935) - 597082..598410 (-) 1329 WP_061774955.1 FAD-dependent oxidoreductase -
  GU333_RS02945 (GU333_02940) treR 598787..599503 (-) 717 WP_167841911.1 trehalose operon repressor Regulator
  GU333_RS02950 (GU333_02945) - 599613..600485 (+) 873 WP_167841142.1 Cof-type HAD-IIB family hydrolase -
  GU333_RS02955 (GU333_02950) - 600630..601619 (+) 990 WP_096040176.1 LacI family DNA-binding transcriptional regulator -
  GU333_RS02960 (GU333_02955) - 602170..603666 (+) 1497 WP_167838542.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27757.88 Da        Isoelectric Point: 7.4144

>NTDB_id=414731 GU333_RS02945 WP_167841911.1 598787..599503(-) (treR) [Lactococcus raffinolactis strain Lr_18_12S]
MKKYEIILHDLEYKIKNKTYQENDLLPSENELVKIYDASRATIRQALKILEEKGLIQKQKGRGSVVIASSKLNFPISGLT
SYKELQNSLGFESVTEVIKFDKITVDSELAAKTLFEIGIPVWRIIRVRKIDGEAVVLDHDFVKYDICPNMTKTDVAYSLY
DYLEKQLKIEISFAQKEITIDFVNDEDRQLLDLNLLDRHVVSVKSHVFLNDASVFQYTDSRHQVDKFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=414731 GU333_RS02945 WP_167841911.1 598787..599503(-) (treR) [Lactococcus raffinolactis strain Lr_18_12S]
ATGAAAAAATATGAAATAATTTTACACGATTTGGAATACAAAATAAAAAATAAGACTTATCAGGAAAACGATCTCCTGCC
TAGTGAAAATGAATTGGTCAAAATCTACGACGCCAGTAGAGCAACGATTCGCCAAGCGCTGAAAATTTTGGAAGAAAAGG
GGTTAATTCAGAAACAAAAAGGGCGAGGCTCTGTGGTTATTGCTTCTAGCAAACTTAATTTTCCGATTTCTGGCTTAACC
AGCTACAAGGAACTACAAAATTCACTCGGATTTGAAAGTGTCACTGAAGTCATCAAATTTGACAAAATCACAGTTGACAG
TGAACTTGCTGCAAAAACACTTTTTGAAATCGGAATCCCTGTGTGGCGTATCATACGCGTTCGTAAGATTGACGGTGAAG
CCGTCGTGCTTGATCATGACTTCGTCAAATATGATATTTGTCCCAATATGACCAAAACAGATGTCGCTTATTCACTCTAC
GACTACCTTGAAAAACAGCTGAAAATTGAGATTTCCTTCGCTCAGAAAGAAATTACCATTGATTTCGTTAATGACGAAGA
TCGGCAACTCTTGGACCTGAATCTCTTGGACCGCCATGTCGTCAGTGTCAAAAGCCATGTTTTTCTCAATGATGCAAGCG
TCTTTCAATACACGGATAGTCGACATCAAGTTGATAAATTCCGGTTCACTGAATTTGCCAGACGGCAAAAACGTTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

49.367

99.58

0.492

Multiple sequence alignment