Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GU333_RS01635 Genome accession   NZ_CP047630
Coordinates   318090..319955 (+) Length   621 a.a.
NCBI ID   WP_061773762.1    Uniprot ID   A0AAE6YKC1
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 313090..324955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS01610 (GU333_01610) - 313610..313990 (+) 381 Protein_292 substrate-binding domain-containing protein -
  GU333_RS01615 (GU333_01615) - 313996..314208 (+) 213 WP_245328139.1 hypothetical protein -
  GU333_RS01620 (GU333_01620) - 314451..315641 (+) 1191 WP_167838419.1 iron-containing alcohol dehydrogenase -
  GU333_RS01625 (GU333_01625) - 315792..316247 (+) 456 WP_167838420.1 MarR family transcriptional regulator -
  GU333_RS01630 (GU333_01630) rcrP 316318..318090 (+) 1773 WP_167841042.1 ABC transporter ATP-binding protein Regulator
  GU333_RS01635 (GU333_01635) rcrQ 318090..319955 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  GU333_RS01640 (GU333_01640) - 320079..320837 (+) 759 WP_167839714.1 tyrosine-protein phosphatase -
  GU333_RS01645 (GU333_01645) - 321111..321518 (+) 408 WP_061773764.1 hypothetical protein -
  GU333_RS01650 (GU333_01650) - 321583..321939 (+) 357 WP_061773765.1 hypothetical protein -
  GU333_RS01655 (GU333_01655) - 321965..322330 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67574.84 Da        Isoelectric Point: 5.7384

>NTDB_id=414721 GU333_RS01635 WP_061773762.1 318090..319955(+) (rcrQ) [Lactococcus raffinolactis strain Lr_18_12S]
MPTTKNTPKKSNGGGFGPGRGLGRGGEKPKDVKKALGDLAKYVKPWYPAILVAAIAACGGAYLTIIGPDRLSEITNKIMA
GLRASFIPKGMPGHGDIDMKAITAIGVTLIAFYLGSALLSYTQGFIMATVTQRTSKKLRQDISTKINKLPLRYFDSHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGTIIMMFKTNVEMSLTAIATTAIGFGLMMLIMTKSQRFFNAQQNGLGE
VNGFVEEVYTGHNIVRVSNADKSKQDEFDEINERLYNSVWKSQFLSGLMMPLMQFIGNFGYGAVCLVGAILAIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSMQSAGAASERIFTFLAEPELEDETGKATTLVNPKGAVEFKNVHFGYNADRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDIDSGQIIIDGTPIKEVTREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
CDITDEQVVAAAKAVGVDHFINTLPNGYDSVLKDADELSVGERQLLTIARALLKNAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEALLAQGGFYADLYNSQFESVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=414721 GU333_RS01635 WP_061773762.1 318090..319955(+) (rcrQ) [Lactococcus raffinolactis strain Lr_18_12S]
ATGCCGACAACAAAAAATACACCTAAAAAATCTAATGGCGGTGGCTTTGGACCAGGTCGTGGCTTAGGTCGCGGAGGTGA
AAAACCCAAAGACGTCAAAAAAGCCTTGGGCGACTTAGCGAAATATGTCAAACCTTGGTATCCGGCGATTCTTGTCGCAG
CCATCGCTGCCTGTGGTGGTGCTTATCTGACCATTATCGGTCCTGATCGCCTATCTGAAATTACTAATAAAATCATGGCT
GGTTTGAGAGCCAGCTTCATCCCCAAAGGCATGCCAGGTCATGGCGACATTGATATGAAAGCCATTACGGCGATTGGTGT
GACTTTGATTGCCTTCTACTTGGGTTCAGCGCTTTTGAGTTACACCCAAGGTTTCATCATGGCGACTGTAACCCAACGGA
CATCTAAGAAACTACGTCAAGATATTTCGACGAAAATTAACAAATTACCTTTGCGCTACTTTGATAGTCATCCTTATGGC
GATACTTTGTCGCGCGTGACAAATGACGTGGATGCGATCAGCCAAGCCCTTAACCAATCCGTTGGGAGTTTGGTTTCAGC
CTTGACGCTCTTCTTTGGCACGATCATCATGATGTTTAAAACCAACGTTGAAATGAGTCTGACTGCTATTGCCACAACGG
CGATCGGCTTTGGCTTAATGATGCTCATCATGACTAAGTCACAAAGATTCTTTAACGCCCAACAAAACGGCCTCGGCGAG
GTTAATGGTTTTGTGGAAGAAGTTTACACGGGTCATAATATCGTGAGAGTGTCCAATGCGGACAAGTCTAAACAAGATGA
GTTCGATGAAATCAATGAACGCCTTTATAACTCAGTTTGGAAATCTCAATTTCTGTCAGGCTTGATGATGCCACTCATGC
AATTCATCGGTAACTTTGGTTACGGTGCTGTCTGTTTGGTTGGGGCGATTTTAGCCATCGATGGTAAAATCGAGTTTGGC
GTGATCGTAGCCTTCATGATTTATATTCGTTTGTTCACTCAACCCTTGACACAAATCGCCCAAGCGGTGACCTCAATGCA
ATCAGCAGGCGCAGCTTCTGAGCGGATTTTCACATTCCTTGCGGAACCTGAATTAGAAGACGAAACGGGTAAGGCAACGA
CATTGGTCAACCCTAAAGGGGCTGTTGAATTTAAAAACGTTCATTTCGGCTATAACGCTGATCGTGTCATCATCAATGAC
TTCTCAGCCAAAGCTGAACCTGGTCAGAAGATTGCCATCGTTGGGCCTACGGGCGCTGGTAAATCAACCATGGTCAACTT
GCTCATGCGTTTCTACGATATTGATTCTGGTCAAATCATCATTGATGGGACACCGATTAAAGAGGTGACGCGTGAAGCGG
TCCACGATCAGTTTTCAATGGTCTTACAAGACACGTGGTTGTTTGAAGGGACAGTGAAAGAAAACTTGATCTATAATCAA
TGTGATATCACGGATGAACAGGTTGTTGCTGCTGCTAAGGCAGTTGGTGTCGATCATTTTATCAATACCTTACCAAATGG
CTATGACTCAGTCTTGAAAGACGCTGATGAATTATCAGTTGGTGAACGTCAGCTCTTAACCATTGCCCGTGCGCTCTTGA
AAAATGCACCAATGTTGATTCTTGATGAAGCGACATCATCAGTAGATACGCGGACTGAAGAATTGATCCAAAAAGCCATG
GATAAACTCATGGAAGGTCGGACAAGTTTTGTCATTGCCCACAGACTGTCTACCATCAAAAATGCTGACTTGATTCTCGT
CATGAAAGACGGCGATATCATCGAAAGTGGCAACCACGAAGCCTTGCTTGCACAAGGTGGCTTCTATGCTGATTTGTACA
ATTCACAGTTTGAAAGCGTGGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(399-546)

ABC transporter transmembrane region (ABC_membrane)

(82-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.508

95.008

0.575

Multiple sequence alignment