Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GU333_RS01630 Genome accession   NZ_CP047630
Coordinates   316318..318090 (+) Length   590 a.a.
NCBI ID   WP_167841042.1    Uniprot ID   A0AAE6YJY5
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 311318..323090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS01600 (GU333_01600) - 312020..312409 (+) 390 Protein_290 substrate-binding domain-containing protein -
  GU333_RS01605 (GU333_01605) - 312478..313476 (+) 999 WP_001048115.1 IS5-like element IS1194 family transposase -
  GU333_RS01610 (GU333_01610) - 313610..313990 (+) 381 Protein_292 substrate-binding domain-containing protein -
  GU333_RS01615 (GU333_01615) - 313996..314208 (+) 213 WP_245328139.1 hypothetical protein -
  GU333_RS01620 (GU333_01620) - 314451..315641 (+) 1191 WP_167838419.1 iron-containing alcohol dehydrogenase -
  GU333_RS01625 (GU333_01625) - 315792..316247 (+) 456 WP_167838420.1 MarR family transcriptional regulator -
  GU333_RS01630 (GU333_01630) rcrP 316318..318090 (+) 1773 WP_167841042.1 ABC transporter ATP-binding protein Regulator
  GU333_RS01635 (GU333_01635) rcrQ 318090..319955 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  GU333_RS01640 (GU333_01640) - 320079..320837 (+) 759 WP_167839714.1 tyrosine-protein phosphatase -
  GU333_RS01645 (GU333_01645) - 321111..321518 (+) 408 WP_061773764.1 hypothetical protein -
  GU333_RS01650 (GU333_01650) - 321583..321939 (+) 357 WP_061773765.1 hypothetical protein -
  GU333_RS01655 (GU333_01655) - 321965..322330 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64889.45 Da        Isoelectric Point: 9.0892

>NTDB_id=414720 GU333_RS01630 WP_167841042.1 316318..318090(+) (rcrP) [Lactococcus raffinolactis strain Lr_18_12S]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=414720 GU333_RS01630 WP_167841042.1 316318..318090(+) (rcrP) [Lactococcus raffinolactis strain Lr_18_12S]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTAATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCGACCAACGACATTACTCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCACCGATTACTGCCGTTTGGGCTATCATGAAAATTGCCAACAAATCATGGGAATGGACGACTGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCACGCTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACTGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCAATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAATGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGTTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.184

100

0.559

Multiple sequence alignment