Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GU333_RS00845 Genome accession   NZ_CP047630
Coordinates   152403..153461 (+) Length   352 a.a.
NCBI ID   WP_167841744.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 147403..158461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS00830 (GU333_00830) rsmD 150947..151513 (+) 567 WP_138491837.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GU333_RS00835 (GU333_00835) - 151476..151937 (+) 462 WP_138491838.1 ASCH domain-containing protein -
  GU333_RS00840 (GU333_00840) coaD 151934..152416 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  GU333_RS00845 (GU333_00845) sepM 152403..153461 (+) 1059 WP_167841744.1 SepM family pheromone-processing serine protease Regulator
  GU333_RS00850 (GU333_00850) - 153745..154977 (+) 1233 WP_138491840.1 GHKL domain-containing protein -
  GU333_RS00855 (GU333_00855) - 155284..155997 (+) 714 WP_167841745.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38014.94 Da        Isoelectric Point: 9.5349

>NTDB_id=414716 GU333_RS00845 WP_167841744.1 152403..153461(+) (sepM) [Lactococcus raffinolactis strain Lr_18_12S]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTLLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKGVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=414716 GU333_RS00845 WP_167841744.1 152403..153461(+) (sepM) [Lactococcus raffinolactis strain Lr_18_12S]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
TATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGAAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTCGATGTGCTGAAGAAATCGACGTTTAAAGGTGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(135-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

51.282

99.716

0.511

Multiple sequence alignment