Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | GU334_RS08950 | Genome accession | NZ_CP047628 |
| Coordinates | 1856512..1858956 (-) | Length | 814 a.a. |
| NCBI ID | WP_167841500.1 | Uniprot ID | - |
| Organism | Lactococcus raffinolactis strain Lr_19_14 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1851512..1863956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU334_RS08930 (GU334_08895) | - | 1852152..1853066 (-) | 915 | WP_061774871.1 | magnesium transporter CorA family protein | - |
| GU334_RS08935 (GU334_08900) | - | 1853090..1854214 (-) | 1125 | WP_096039505.1 | VanZ family protein | - |
| GU334_RS08940 (GU334_08905) | eno | 1854314..1855639 (-) | 1326 | WP_061774869.1 | phosphopyruvate hydratase | - |
| GU334_RS08945 (GU334_08910) | raiA | 1855870..1856421 (-) | 552 | WP_096039506.1 | ribosome-associated translation inhibitor RaiA | - |
| GU334_RS08950 (GU334_08915) | clpC | 1856512..1858956 (-) | 2445 | WP_167841500.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| GU334_RS08955 (GU334_08920) | - | 1858985..1859449 (-) | 465 | WP_167372298.1 | CtsR family transcriptional regulator | - |
| GU334_RS08960 (GU334_08925) | - | 1859815..1860516 (+) | 702 | WP_061774866.1 | XRE family transcriptional regulator | - |
| GU334_RS08965 (GU334_08930) | - | 1860563..1862008 (+) | 1446 | WP_167841501.1 | Y-family DNA polymerase | - |
| GU334_RS08970 | - | 1862005..1862175 (+) | 171 | WP_167372299.1 | hypothetical protein | - |
| GU334_RS08975 (GU334_08935) | - | 1862211..1862612 (+) | 402 | WP_061774864.1 | YbgA family protein | - |
| GU334_RS08980 (GU334_08940) | - | 1862596..1862958 (+) | 363 | WP_167841502.1 | TIGR02328 family protein | - |
| GU334_RS08985 (GU334_08945) | greA | 1863047..1863529 (-) | 483 | WP_003140218.1 | transcription elongation factor GreA | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 89727.53 Da Isoelectric Point: 5.5549
>NTDB_id=414702 GU334_RS08950 WP_167841500.1 1856512..1858956(-) (clpC) [Lactococcus raffinolactis strain Lr_19_14]
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLIELGNMNVKKIAKKAVTPMGKR
DIASGVAATSITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIVILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
DDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVT
VGVSKGELTIKVID
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLIELGNMNVKKIAKKAVTPMGKR
DIASGVAATSITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIVILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
DDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVT
VGVSKGELTIKVID
Nucleotide
Download Length: 2445 bp
>NTDB_id=414702 GU334_RS08950 WP_167841500.1 1856512..1858956(-) (clpC) [Lactococcus raffinolactis strain Lr_19_14]
ATGACACAAAATTATACGCACATACTTGAAGATATTCTCAAAACAGCTCGCGTTTTTGCGGCGGGCAATGGTTATGATTA
TGCAGAAACATCACACGTCTTGGCGGGGATGTTATCGAGTAACGATAGCTTTGGCCAAAACATTCTAACGGATCACGATG
TGACGATTGAAATGGCGCTAGATGAAATCGAACAACACCAGTTACCCGAAAAAATGCAAACGGTTCAAAATATCCAATTT
TCACCTAAGGTCGAACAGCTCTTGCTTGAAGCAGATGCACTTGCAGCTCAAAATCATTTGGCAGAAACAGGGTCTGAACA
CTTGCTCTATGTCATCTTGACTGATGATGACAATGTTGCCAAGAAACTTTTGGAACTAAACAAAATCAAAATTACTGAAA
TCGTTAAAGACTTAATTGAGCTCGGTAATATGAATGTGAAAAAAATAGCTAAAAAAGCGGTCACACCGATGGGAAAACGA
GATATCGCATCGGGTGTTGCGGCGACAAGTATTACGCCAACGCTAGATTCAGTGGCGCGTGATGTGACAGAAGATGCCAG
ACAAGGGCGCATTGACCCGATGATTGGGCGTGATAAGGAAATTGAGCGCGTGATTCACATTTTGAGTCGTCGCACGAAAA
ATAATCCTGTCCTCGTTGGCGAACCAGGTGTTGGTAAATCTGCCATTATCGAAGGCTTGGCACAACGCATGATTGATGGT
AACATCCCTGCCAATATGCAAGGTGTGCGTCTTATGTCACTTAATATCGCTAATGTCGTTGCCGGTACTAAATTCCGCGG
AGAATTTGAAGACCGGATGACTGCGATTGTTGATGAAGTCAGCCAAGATGCTAACACTATCGTGTTTGTTGATGAGCTCC
ATACTATCGTCGGTGCTGGTGGCGGAACGGATTCTGTTACCGATGCCTCAAACATTATGAAACCTGCACTAGCTCGTGGT
GAGTTTCAGCTGATTGGCGCAACGACCTTTAACGAATACCAAAAATACATCGAAAAAGATGCTGCTCTGGAACGTCGCTT
TGCAAAAGTTACTGTTGAAGAGCCATCTTCAGACGAATCGATTGTAATTCTACAAGGTCTTCAAAGCAAATTTGAAGCCT
TTCATCAGGTAAATTTTGACGCTGATGCAGTCAAGGCAGCGGTTCAGCTCAGTGTTCGCTATATGCCAAGTCGCAGACTG
CCGGATAAGGCCATTGACTTACTCGATGAAGCAGCTGCTGCCGTTAAAATTTCAGCTAAAAATAATTTATCCGAACAAAG
TAAGCTAGATAAAAAAGCATCACAGCTTGATGAACAGTTACAAGAAGCGATTATCAATCAAGATTTTGTGCTAGCTAAAA
GCTTAAACAAAGATCTTCAAAAACTTGAAGCCAAACGTGAGAAACTAACGGTTAAAACAAAGTCGTCTCGTGTGAGCGAA
GATGATGTCTTTGCGGTTGTGTCTAACTTGACTGGCGTGCCTGTCACACAGATGAGCCAAAGTGAGATGACGCGTTTGAT
TAACTTAGAAAAAGAACTCCATAAACGCGTTATCGGTCAAAGCGAAGCCGTTACAGCTGTTGCTAGTGCTATCCGTCGTA
GTCGTTCAGGCATCTCAGATGACAGACGTCCTATGGGTTCCTTCATGTTCTTGGGGCCTACCGGTGTCGGGAAGACAGAG
CTTGCTAAAGCTCTGGCAGAGACCGTTTTCGGCGATGAAAACAGCATGATTCGTATCGATATGAGCGAATATATGGAGAA
ATTTAACACCAGTCGTTTAGTTGGAGCACCTCCTGGCTATGTTGGCTATGACGAGGGCGGTCAGCTAACCGAGCAGGTGC
GCAACAAGCCTTATGCTGTCGTCCTATTTGACGAGGCTGAGAAAGCCCATCCGGATGTCTTTAACCTCCTGCTCCAAATC
CTTGATGACGGCTTCATCACGGATGGTAAGGGGCGCAAGGTAGACTTCCGCAACACAATCATCATCATGACCAGTAACTT
GGGTGCGACCTCATTACGCGACGATAAGACGGTCGGATTTGGTGCAGCCAATGCCTCAACCGACTACGTCGCCATGAAGT
CTAGAATTTTAGAAGAGTTGAAAAAACGGTATCGCCCAGAGTTTCTCAACCGTATCGATGAAAGCATTGTTTTCCACCCA
CTTTCTGAGCAGGAATTATCAGATATCGTAAAAATCATGGCTAAACCATTGATTAAACGTTTGGCAGAACGTCACATCAC
CTTGAAACTTTCTGCCACTGCCTATCAGCTTATCGCTAAAAATGGCTTTGAACCAGAATATGGGGCCCGTCCAATCAGAA
AAGCTTTGGAGAAAAAACTTGAGAATCCTCTGTCGGATAAAATTTTGTCAGGCGAAATTAAGGCTGGAAATAGTGTGACA
GTAGGCGTTTCCAAAGGTGAGTTGACAATCAAAGTTATTGATTAA
ATGACACAAAATTATACGCACATACTTGAAGATATTCTCAAAACAGCTCGCGTTTTTGCGGCGGGCAATGGTTATGATTA
TGCAGAAACATCACACGTCTTGGCGGGGATGTTATCGAGTAACGATAGCTTTGGCCAAAACATTCTAACGGATCACGATG
TGACGATTGAAATGGCGCTAGATGAAATCGAACAACACCAGTTACCCGAAAAAATGCAAACGGTTCAAAATATCCAATTT
TCACCTAAGGTCGAACAGCTCTTGCTTGAAGCAGATGCACTTGCAGCTCAAAATCATTTGGCAGAAACAGGGTCTGAACA
CTTGCTCTATGTCATCTTGACTGATGATGACAATGTTGCCAAGAAACTTTTGGAACTAAACAAAATCAAAATTACTGAAA
TCGTTAAAGACTTAATTGAGCTCGGTAATATGAATGTGAAAAAAATAGCTAAAAAAGCGGTCACACCGATGGGAAAACGA
GATATCGCATCGGGTGTTGCGGCGACAAGTATTACGCCAACGCTAGATTCAGTGGCGCGTGATGTGACAGAAGATGCCAG
ACAAGGGCGCATTGACCCGATGATTGGGCGTGATAAGGAAATTGAGCGCGTGATTCACATTTTGAGTCGTCGCACGAAAA
ATAATCCTGTCCTCGTTGGCGAACCAGGTGTTGGTAAATCTGCCATTATCGAAGGCTTGGCACAACGCATGATTGATGGT
AACATCCCTGCCAATATGCAAGGTGTGCGTCTTATGTCACTTAATATCGCTAATGTCGTTGCCGGTACTAAATTCCGCGG
AGAATTTGAAGACCGGATGACTGCGATTGTTGATGAAGTCAGCCAAGATGCTAACACTATCGTGTTTGTTGATGAGCTCC
ATACTATCGTCGGTGCTGGTGGCGGAACGGATTCTGTTACCGATGCCTCAAACATTATGAAACCTGCACTAGCTCGTGGT
GAGTTTCAGCTGATTGGCGCAACGACCTTTAACGAATACCAAAAATACATCGAAAAAGATGCTGCTCTGGAACGTCGCTT
TGCAAAAGTTACTGTTGAAGAGCCATCTTCAGACGAATCGATTGTAATTCTACAAGGTCTTCAAAGCAAATTTGAAGCCT
TTCATCAGGTAAATTTTGACGCTGATGCAGTCAAGGCAGCGGTTCAGCTCAGTGTTCGCTATATGCCAAGTCGCAGACTG
CCGGATAAGGCCATTGACTTACTCGATGAAGCAGCTGCTGCCGTTAAAATTTCAGCTAAAAATAATTTATCCGAACAAAG
TAAGCTAGATAAAAAAGCATCACAGCTTGATGAACAGTTACAAGAAGCGATTATCAATCAAGATTTTGTGCTAGCTAAAA
GCTTAAACAAAGATCTTCAAAAACTTGAAGCCAAACGTGAGAAACTAACGGTTAAAACAAAGTCGTCTCGTGTGAGCGAA
GATGATGTCTTTGCGGTTGTGTCTAACTTGACTGGCGTGCCTGTCACACAGATGAGCCAAAGTGAGATGACGCGTTTGAT
TAACTTAGAAAAAGAACTCCATAAACGCGTTATCGGTCAAAGCGAAGCCGTTACAGCTGTTGCTAGTGCTATCCGTCGTA
GTCGTTCAGGCATCTCAGATGACAGACGTCCTATGGGTTCCTTCATGTTCTTGGGGCCTACCGGTGTCGGGAAGACAGAG
CTTGCTAAAGCTCTGGCAGAGACCGTTTTCGGCGATGAAAACAGCATGATTCGTATCGATATGAGCGAATATATGGAGAA
ATTTAACACCAGTCGTTTAGTTGGAGCACCTCCTGGCTATGTTGGCTATGACGAGGGCGGTCAGCTAACCGAGCAGGTGC
GCAACAAGCCTTATGCTGTCGTCCTATTTGACGAGGCTGAGAAAGCCCATCCGGATGTCTTTAACCTCCTGCTCCAAATC
CTTGATGACGGCTTCATCACGGATGGTAAGGGGCGCAAGGTAGACTTCCGCAACACAATCATCATCATGACCAGTAACTT
GGGTGCGACCTCATTACGCGACGATAAGACGGTCGGATTTGGTGCAGCCAATGCCTCAACCGACTACGTCGCCATGAAGT
CTAGAATTTTAGAAGAGTTGAAAAAACGGTATCGCCCAGAGTTTCTCAACCGTATCGATGAAAGCATTGTTTTCCACCCA
CTTTCTGAGCAGGAATTATCAGATATCGTAAAAATCATGGCTAAACCATTGATTAAACGTTTGGCAGAACGTCACATCAC
CTTGAAACTTTCTGCCACTGCCTATCAGCTTATCGCTAAAAATGGCTTTGAACCAGAATATGGGGCCCGTCCAATCAGAA
AAGCTTTGGAGAAAAAACTTGAGAATCCTCTGTCGGATAAAATTTTGTCAGGCGAAATTAAGGCTGGAAATAGTGTGACA
GTAGGCGTTTCCAAAGGTGAGTTGACAATCAAAGTTATTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
62.099 |
99.509 |
0.618 |
| clpC | Streptococcus thermophilus LMD-9 |
49.161 |
100 |
0.504 |
| clpC | Streptococcus pneumoniae D39 |
49.337 |
100 |
0.502 |
| clpC | Streptococcus pneumoniae Rx1 |
49.337 |
100 |
0.502 |
| clpC | Streptococcus thermophilus LMG 18311 |
48.921 |
100 |
0.501 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.216 |
100 |
0.501 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.234 |
100 |
0.486 |
| clpC | Streptococcus mutans UA159 |
47.368 |
100 |
0.486 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae Rx1 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae D39 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae R6 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus mutans UA159 |
46.178 |
78.747 |
0.364 |